Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,595,050 – 12,595,140 |
Length | 90 |
Max. P | 0.643291 |
Location | 12,595,050 – 12,595,140 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 83.71 |
Mean single sequence MFE | -18.58 |
Consensus MFE | -13.05 |
Energy contribution | -14.38 |
Covariance contribution | 1.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.20 |
Structure conservation index | 0.70 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.643291 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12595050 90 + 22407834 UUUUGGCAACGUGUGUGUCUUUUGAUUUAUUAUGCGGCCUUUAUUUCAUUCAUAAAAAUGAAAUGAUUAUGCUUUAUGCUAUGUGCCAUG ...(((((.((((((.(((....)))....))))))((..((((((((((......))))))))))....))...........))))).. ( -20.90) >DroPse_CAF1 213795 69 + 1 AUUUGGCAACGUGUGUGUCUUUUGAUUUAUUAUGCGGCCUUUAUUUCAUUCAUAA-AAUGAAUC--------------------UCCAUG ....(((..((((...(((....)))....))))..))).....((((((.....-))))))..--------------------...... ( -12.20) >DroSec_CAF1 162073 89 + 1 UUUUGGCAACGUGUGUGUCUUUUGAUUUAUUAUGCUGCCUUUAUUUCAUUCAUAA-AAUGAAAUGAUUAUGCUGUAUGCUAUGUGCCAUG ...(((((.((((.(((((....))).....((((.((..((((((((((.....-))))))))))....)).))))))))))))))).. ( -21.30) >DroSim_CAF1 165435 89 + 1 UUUUGGCAACGUGUGUGUCUUUUGAUUUAUUAUGCGGCCUUUAUUUCAUUCAUAA-AAUGAAAUGAUUAUGCUAUAUGCUAUGUGCCAUG ...(((((.((((((.(((....)))....))))))((..((((((((((.....-))))))))))....))...........))))).. ( -20.70) >DroYak_CAF1 165502 89 + 1 UUUUGGCAACGUGUGUGUCUUUUGAUUUAUUAUGCGGCCUUUAUUUCAUUCAUAA-AAUGAAAUGAUUAUGCUAUAUGCUAUAUGGCAUG ....(((..((((...(((....)))....))))..))).((((((((((.....-)))))))))).((((((((((...)))))))))) ( -24.20) >DroPer_CAF1 210952 69 + 1 AUUUGGCAACGUGUGUGUCUUUUGAUUUAUUAUGCGGCCUUUAUUUCAUUCAUAA-AAUGAAUC--------------------UCCAUG ....(((..((((...(((....)))....))))..))).....((((((.....-))))))..--------------------...... ( -12.20) >consensus UUUUGGCAACGUGUGUGUCUUUUGAUUUAUUAUGCGGCCUUUAUUUCAUUCAUAA_AAUGAAAUGAUUAUGCU_UAUGCUAUGUGCCAUG ....(((..((((...(((....)))....))))..))).((((((((((......))))))))))........................ (-13.05 = -14.38 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:13 2006