Locus 4370

Sequence ID 2L_DroMel_CAF1
Location 12,583,218 – 12,583,317
Length 99
Max. P 0.777469
window6883

overview

Window 3

Location 12,583,218 – 12,583,317
Length 99
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 83.63
Mean single sequence MFE -26.18
Consensus MFE -16.12
Energy contribution -16.32
Covariance contribution 0.20
Combinations/Pair 1.38
Mean z-score -3.27
Structure conservation index 0.62
SVM decision value 0.55
SVM RNA-class probability 0.777469
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12583218 99 - 22407834
AAUUAUUUCAGGAAGAUUUCCAACAGUUUAACGCCUUUGUU---GGACUUGUUGGCGCCAACGGCAAUUUCUUGAUUUGAAAUCUACUUCAAAAUAUAAUUC
((((((.((((((((....((((((((((((((....))))---)))).)))))).(((...)))..))))))))((((((......))))))..)))))). ( -26.90)
>DroSec_CAF1 150315 98 - 1
AAUUAUUUCAGGAAGAUUUCCAACAGUUUAACGCCUUUGUU---GAAACUGUUGGCGCCAUCGGCAAUUUCUUGAUUUAAAAUCUACUUG-AAAUAUAAUUU
...(((((((((.((((((((((((((((((((....))))---).))))))))).(((...)))..............)))))).))))-)))))...... ( -30.20)
>DroSim_CAF1 153263 98 - 1
AAUUAUUUCAGGAAGAUUUCCAACAGUUUAACGCCUUUGUU---GGAACUGUUGGCGCCAACGGCAAUUUCUUGAUUUGAAAUCUACUUG-AAAUAUAAUUU
...(((((((((.((((((((((((((((((((....))))---.)))))))))..(((...))).............))))))).))))-)))))...... ( -31.30)
>DroEre_CAF1 148064 94 - 1
AAUUAUUUCAGGAAGAUUUCCAACAGUUUAACGUCUUUGUU---GUAACUGUUGGCGCCAACGGCAAUUGCUUGAUUUGAAAUCUACUUU-AAA----AGUU
..(((..(((((.......((((((((((((((....))))---).))))))))).(((...))).....)))))..)))..........-...----.... ( -24.00)
>DroYak_CAF1 153228 94 - 1
AAUUAUUUCAGGAUGAUUUCCAACAGUUUAACGGCUUUGUU---GCAACUGUUGGCGCCAACGGCAAUUGCCUGAUUUGAAAUCUACUUU-AAA----AGUU
..(((..(((((.(((((.((((((((((((((....))))---).))))))))).(((...)))))))))))))..)))..........-...----.... ( -25.90)
>DroAna_CAF1 148648 97 - 1
AAUUAUUUAAGGGCGAUUUUCAACAGCUUAACAUAUUUUUUUGUGGGGCCUCUGGCGCCAAAUAUAAUUGGUUGAUUUGAAAUCUAUUUC-AAC----AGUU
((((((.....((((....(((...(((..(((........)))..)))...)))))))....)))))).(((((..((.....))..))-)))----.... ( -18.80)
>consensus
AAUUAUUUCAGGAAGAUUUCCAACAGUUUAACGCCUUUGUU___GGAACUGUUGGCGCCAACGGCAAUUGCUUGAUUUGAAAUCUACUUC_AAA____AGUU
..(((..(((((.(((((.((((((((((((((....))))....)))))))))).((.....))))))))))))..)))...................... (-16.12 = -16.32 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:10 2006