Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,304,947 – 1,305,038 |
Length | 91 |
Max. P | 0.985982 |
Location | 1,304,947 – 1,305,038 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 94.27 |
Mean single sequence MFE | -23.92 |
Consensus MFE | -22.99 |
Energy contribution | -22.85 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.05 |
Mean z-score | -1.44 |
Structure conservation index | 0.96 |
SVM decision value | 2.03 |
SVM RNA-class probability | 0.985982 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1304947 91 - 22407834 -GUGGCAUAUGACAAAGUUUAAGUGCUUGCUAAAUCCAUAGAUUUCAUGCUGGCAGCCGUGGCAAACAUGGCCACACAUUGUGCGAGUGCGA -...((((.((((((.((.....((((.((.(((((....)))))...)).))))((((((.....))))))...)).)))).)).)))).. ( -26.30) >DroSec_CAF1 63744 82 - 1 -GUGGCAUAUGACAAAGUUUAAGUGCUUGCUAAAUCCAUAGAUUUCAUGCUGGCAGCCGUGGCAAACAUGGCCACACAACAUG--------- -(((((.((((............((((.((.(((((....)))))...)).))))((....))...)))))))))........--------- ( -23.20) >DroSim_CAF1 64593 85 - 1 -GUGGCAUAUGACAAAGUUUAAGUGCUUGCUAAAUCCAUAGAUUUCAUGCUGGCAGCCGUGGCAAACAUGGCCACACAUUGUGC------GA -...(((((((............((((.((.(((((....)))))...)).))))((((((.....))))))....)).)))))------.. ( -23.80) >DroEre_CAF1 75223 85 - 1 -GUGGCAUAUGACAAAGUUUAAGUGCUUGCUAAAUCCAUAGAUUUCAUGCUGGCAGCCGUGGCAAACAUGGCCACACAUUGUGC------GA -...(((((((............((((.((.(((((....)))))...)).))))((((((.....))))))....)).)))))------.. ( -23.80) >DroYak_CAF1 66104 86 - 1 UGUGGCAUAUGACAAAGUUUAAGUGCUUGCUAAAUCCAUAGAUUUCAUGCUGGCAGCCGUGGCAAACAUGGCCACACAUUGUGC------GA ....(((((((............((((.((.(((((....)))))...)).))))((((((.....))))))....)).)))))------.. ( -23.80) >DroAna_CAF1 89864 85 - 1 -GUGGCAUAUGACAAAGUUUAAGUGCUUGCUAAAUCCAUAGAUUUCAUGCUGGCAGUCGUGGCAAACAUGGCCACAUAUUGUGC------GA -...(((((.(((..........((((.((.(((((....)))))...)).)))))))(((((.......)))))....)))))------.. ( -22.60) >consensus _GUGGCAUAUGACAAAGUUUAAGUGCUUGCUAAAUCCAUAGAUUUCAUGCUGGCAGCCGUGGCAAACAUGGCCACACAUUGUGC______GA .(((((.((((............((((.((.(((((....)))))...)).))))((....))...)))))))))................. (-22.99 = -22.85 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:14 2006