Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,579,200 – 12,579,296 |
Length | 96 |
Max. P | 0.825701 |
Location | 12,579,200 – 12,579,296 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 86.25 |
Mean single sequence MFE | -32.82 |
Consensus MFE | -25.18 |
Energy contribution | -25.85 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.19 |
Mean z-score | -3.04 |
Structure conservation index | 0.77 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.825701 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12579200 96 + 22407834 GUGGAAAUACCAUAAAAGUAGUGC---AGCAGCGCCAUCUGGCGUCCGGAAC--UGGUUCCAACUCCUUAUCGAAGGGGUUGAAAUGGAUCUAAAAAAAAA .((((....((((..((.((((.(---....(((((....)))))...).))--)).)).(((((((((....)))))))))..)))).))))........ ( -26.80) >DroSec_CAF1 144399 92 + 1 GUGGAAAUCCCAUAAAAGUAGUGC---AGCAGCGCCAUCUGGCGUCCGGAAC--UGGUUCCAACUCCUUAUCGAAGGGGUUGGAACGGAUCUAAA----AA .((((..(((........((((.(---....(((((....)))))...).))--))(((((((((((((....))))))))))))))))))))..----.. ( -35.20) >DroSim_CAF1 147626 92 + 1 GUGGAAAUCCCAUAAAAGUAGUGC---AGCAGCGCCAUCUGGCGUCCGGAAC--UGGUUCCAACUCCUUAUCGAAGGGGUUGGAACGGAUCUAAA----AA .((((..(((........((((.(---....(((((....)))))...).))--))(((((((((((((....))))))))))))))))))))..----.. ( -35.20) >DroEre_CAF1 143357 92 + 1 GUGGAAAUCGCACAAAAGUAGUCC---AGCAGCGCCAUCUGGCGUCCGGAAC--UGGUUCCAACUCCUUAUCGAAGGGGUUGGAAUGGUUCUAAA----AA .((((...(........)...)))---)...(((((....)))))..(((((--((.((((((((((((....)))))))))))))))))))...----.. ( -35.90) >DroYak_CAF1 149000 92 + 1 AUGGAAAUCCCACAAAAGUAGCUC---AGCAGCGCCAUCUGGCGUGCGGAAC--UGGUUCCCACUCCUUAUCGAAGGGGUUGGAAUGGUUCUAAA----AA .(((.....)))............---.(((.((((....)))))))(((((--((.((((.(((((((....))))))).)))))))))))...----.. ( -32.80) >DroPer_CAF1 190257 95 + 1 GUGGAAAUCCUAGAAA--CAGUCCUCCACCAGCGCCAUCUGGCGUAAGGAAUGGUGGGUUUACCUCCUCAUAGAAGGGGUUGGAAGUGUUCUAAA----AA ..((....))(((((.--...(((((((((((((((....)))))......)))))))...(((.(((......)))))).)))....)))))..----.. ( -31.00) >consensus GUGGAAAUCCCAUAAAAGUAGUGC___AGCAGCGCCAUCUGGCGUCCGGAAC__UGGUUCCAACUCCUUAUCGAAGGGGUUGGAAUGGAUCUAAA____AA .((((....((.........((......)).(((((....)))))..)).......(((((((((((((....)))))))))))))...))))........ (-25.18 = -25.85 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:09 2006