Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,567,742 – 12,567,839 |
Length | 97 |
Max. P | 0.793100 |
Location | 12,567,742 – 12,567,839 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 80.95 |
Mean single sequence MFE | -20.37 |
Consensus MFE | -13.84 |
Energy contribution | -14.27 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.16 |
Mean z-score | -1.56 |
Structure conservation index | 0.68 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.513348 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12567742 97 + 22407834 UGAUUCGCAGGAAAAUUUCCUUGGCCAUGCCGUUUGACCAUUUCCACUCUCUCCCCAUCGAGCUGCUUUUCCGAGCUGCUUUUCCGGCCUUUGCCAU .........((((((.(..(((((....((.((((((....................)))))).))....)))))..).))))))(((....))).. ( -22.05) >DroSec_CAF1 132914 92 + 1 UGAUUCGCAGGAAAAUUUCCUUGGCCGUGCCGUUUGACCAUUUCCACUCUCUCCCCU-----CGGCUUUUCCGAGCUGCUUUUCCGGCCUUUGCCAU .........((((((.(..(((((....((((.........................-----))))....)))))..).))))))(((....))).. ( -21.11) >DroSim_CAF1 135589 92 + 1 UGAUUCGCAGGAAAAUUUCCUUGGCCAUGCCGUUUGACCAAUUCCACUCUCUCCCCU-----CGGCCUUUUCGAGCUGCUUUUCCGGCCUUUGCCAU .........((((((.(..(((((....((((.........................-----))))....)))))..).))))))(((....))).. ( -17.91) >DroEre_CAF1 131714 78 + 1 UGAUUCGCAGGAAAAUUUCUUCGG------------UCCAAUUCCACUCCCC--CCG-----CGGCCCAUCUGCGCCGCUUUUCCGGCCUUUGCCAU .........((((((.......((------------.......)).......--..(-----((((.(....).)))))))))))(((....))).. ( -20.40) >consensus UGAUUCGCAGGAAAAUUUCCUUGGCCAUGCCGUUUGACCAAUUCCACUCUCUCCCCU_____CGGCCUUUCCGAGCUGCUUUUCCGGCCUUUGCCAU .........((((((.......((.((.......)).)).......................((((((....)))))).))))))(((....))).. (-13.84 = -14.27 + 0.44)
Location | 12,567,742 – 12,567,839 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 80.95 |
Mean single sequence MFE | -25.98 |
Consensus MFE | -18.26 |
Energy contribution | -19.07 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.12 |
Mean z-score | -1.84 |
Structure conservation index | 0.70 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.793100 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12567742 97 - 22407834 AUGGCAAAGGCCGGAAAAGCAGCUCGGAAAAGCAGCUCGAUGGGGAGAGAGUGGAAAUGGUCAAACGGCAUGGCCAAGGAAAUUUUCCUGCGAAUCA .((((....((((....(((.(((......))).))).........((..((....))..))...))))...))))((((.....))))........ ( -24.80) >DroSec_CAF1 132914 92 - 1 AUGGCAAAGGCCGGAAAAGCAGCUCGGAAAAGCCG-----AGGGGAGAGAGUGGAAAUGGUCAAACGGCACGGCCAAGGAAAUUUUCCUGCGAAUCA .((((....((((.........(((((.....)))-----))....((..((....))..))...))))...))))((((.....))))........ ( -27.60) >DroSim_CAF1 135589 92 - 1 AUGGCAAAGGCCGGAAAAGCAGCUCGAAAAGGCCG-----AGGGGAGAGAGUGGAAUUGGUCAAACGGCAUGGCCAAGGAAAUUUUCCUGCGAAUCA .((((....))))((...((((((((.......))-----))....((((((....(((((((.......)))))))....))))))))))...)). ( -27.30) >DroEre_CAF1 131714 78 - 1 AUGGCAAAGGCCGGAAAAGCGGCGCAGAUGGGCCG-----CGG--GGGGAGUGGAAUUGGA------------CCGAAGAAAUUUUCCUGCGAAUCA .((((....))))((.....(((.(....).)))(-----(((--(..((.(((.......------------)))......))..)))))...)). ( -24.20) >consensus AUGGCAAAGGCCGGAAAAGCAGCUCGGAAAAGCCG_____AGGGGAGAGAGUGGAAAUGGUCAAACGGCAUGGCCAAGGAAAUUUUCCUGCGAAUCA .((((....))))((...((((..........((.......))...((((((....(((((((.......)))))))....))))))))))...)). (-18.26 = -19.07 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:07 2006