Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,553,691 – 12,553,801 |
Length | 110 |
Max. P | 0.996438 |
Location | 12,553,691 – 12,553,801 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.63 |
Mean single sequence MFE | -30.77 |
Consensus MFE | -10.69 |
Energy contribution | -11.80 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.06 |
Mean z-score | -2.14 |
Structure conservation index | 0.35 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.585115 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12553691 110 + 22407834 UUUGGGGUUGCAAAACUUCGGAAGCUGAAAGCAUUUUGCUGUAGCCAUCGCAU-UUUGGGGGAAGAAAUCCGA---AUUCGAGUCCAAACCGAAUUCUA--AUAG----AAGUUUUGCAG ........((((((((((((((.((((..(((.....))).))))..((.(..-.....).)).....)))((---(((((.((....)))))))))..--...)----)))))))))). ( -33.50) >DroSec_CAF1 125847 109 + 1 UUUGGGGUUGCAAAACUUCGGAAGCUGAAAGCAUUGUGCUGUAGCCAUC--GCCUUUGGGGGAAGAAAUCCGA---GUUCGAGUCCAAACCAAAUUCUA--AUAG----AAGUUUUGCAG ........(((((((((((((..((((..(((.....))).))))....--.))(((((.(((.(((......---.)))...)))...))))).....--...)----)))))))))). ( -32.00) >DroSim_CAF1 128622 111 + 1 UUUGGGGUUGCAAAACUUCGGAAGCUGAAAGCAUUUUGCUGUAGCCAUCUCACAUUUGGGGGAAGAAAUCCGA---GUUCGAAUACGAACCGAAUUCUA--AUAG----AAGUUUUGCAG ........((((((((((((((.((((..(((.....))).))))..(((((....))))).......)))((---(((((.........)))))))..--...)----)))))))))). ( -34.50) >DroEre_CAF1 124780 103 + 1 UUUGGGGUUGCAAAACUUCGGAAGCUGAAAGCAUUUUGCUGUACGCAGC--GCAUUUGGGGGAAGAAAUGCGAGAAAUGCGA---------GAAUUCUA--AUAG----AAGUUUUGCAG ........(((((((((((((((.......(((((((((((....))))--((((((........))))))..)))))))..---------...)))).--...)----)))))))))). ( -34.50) >DroYak_CAF1 129908 96 + 1 UUUGGGGUUGCAAAACUUCGCAAGCUGAAAGCAUUUCGCUGU-----------AUUUGGGGGAAGAAAUCCUA---AGUCGAGU------UGAAUUCUAGAAUAG----AAGUUUUGCAG ........(((((((((((.....(((((..((.((((....-----------((((((((.......)))))---))))))).------))..))).))....)----)))))))))). ( -28.20) >DroAna_CAF1 125994 94 + 1 UUUAGGGUUGCAAAAGUUCCACUCCUGAAAGCAUUCUCCUGUACG---------AUGGGGGGAA---GUCCUU---AUUCC---------UUAGUCCUC--AUUGAAGCAAGUCCUGCUG ((((((((.((....))...)).))))))((((....(.(((.((---------((((((((((---......---.))))---------.....))))--))))..))).)...)))). ( -21.90) >consensus UUUGGGGUUGCAAAACUUCGGAAGCUGAAAGCAUUUUGCUGUAGCCAUC___CAUUUGGGGGAAGAAAUCCGA___AUUCGAGU______CGAAUUCUA__AUAG____AAGUUUUGCAG ........((((((((((...........(((.....)))...............(((((........)))))....................................)))))))))). (-10.69 = -11.80 + 1.11)
Location | 12,553,691 – 12,553,801 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.63 |
Mean single sequence MFE | -27.33 |
Consensus MFE | -11.44 |
Energy contribution | -11.83 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.12 |
Mean z-score | -3.11 |
Structure conservation index | 0.42 |
SVM decision value | 2.70 |
SVM RNA-class probability | 0.996438 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12553691 110 - 22407834 CUGCAAAACUU----CUAU--UAGAAUUCGGUUUGGACUCGAAU---UCGGAUUUCUUCCCCCAAA-AUGCGAUGGCUACAGCAAAAUGCUUUCAGCUUCCGAAGUUUUGCAACCCCAAA .((((((((((----(...--..(((((((((....)).)))))---))(((.....)))......-....(..((((..(((.....)))...))))..))))))))))))........ ( -32.30) >DroSec_CAF1 125847 109 - 1 CUGCAAAACUU----CUAU--UAGAAUUUGGUUUGGACUCGAAC---UCGGAUUUCUUCCCCCAAAGGC--GAUGGCUACAGCACAAUGCUUUCAGCUUCCGAAGUUUUGCAACCCCAAA .((((((((((----(...--..((((((((((((....)))))---.))))))).........(((((--(.((((....)).)).))))))........)))))))))))........ ( -30.20) >DroSim_CAF1 128622 111 - 1 CUGCAAAACUU----CUAU--UAGAAUUCGGUUCGUAUUCGAAC---UCGGAUUUCUUCCCCCAAAUGUGAGAUGGCUACAGCAAAAUGCUUUCAGCUUCCGAAGUUUUGCAACCCCAAA .((((((((((----(...--..((((((((((((....)))))---.)))))))................(..((((..(((.....)))...))))..))))))))))))........ ( -33.40) >DroEre_CAF1 124780 103 - 1 CUGCAAAACUU----CUAU--UAGAAUUC---------UCGCAUUUCUCGCAUUUCUUCCCCCAAAUGC--GCUGCGUACAGCAAAAUGCUUUCAGCUUCCGAAGUUUUGCAACCCCAAA .((((((((((----(...--..((....---------))((((((...((((((........))))))--((((....)))).))))))...........)))))))))))........ ( -29.60) >DroYak_CAF1 129908 96 - 1 CUGCAAAACUU----CUAUUCUAGAAUUCA------ACUCGACU---UAGGAUUUCUUCCCCCAAAU-----------ACAGCGAAAUGCUUUCAGCUUGCGAAGUUUUGCAACCCCAAA .((((((((((----(..............------........---..(((.....))).......-----------...((((...((.....)))))))))))))))))........ ( -21.20) >DroAna_CAF1 125994 94 - 1 CAGCAGGACUUGCUUCAAU--GAGGACUAA---------GGAAU---AAGGAC---UUCCCCCCAU---------CGUACAGGAGAAUGCUUUCAGGAGUGGAACUUUUGCAACCCUAAA ..((((((.(..((((.((--((((.....---------((((.---......---))))..)).)---------)))....((((....)))).))))..)...))))))......... ( -17.30) >consensus CUGCAAAACUU____CUAU__UAGAAUUCG______ACUCGAAU___UCGGAUUUCUUCCCCCAAAUG___GAUGGCUACAGCAAAAUGCUUUCAGCUUCCGAAGUUUUGCAACCCCAAA .((((((((((......................................(((.....)))....................(((.....)))...........))))))))))........ (-11.44 = -11.83 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:05 2006