| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,551,683 – 12,551,777 |
| Length | 94 |
| Max. P | 0.952968 |
| Location | 12,551,683 – 12,551,777 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.60 |
| Mean single sequence MFE | -25.12 |
| Consensus MFE | -18.58 |
| Energy contribution | -18.38 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.952968 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12551683 94 + 22407834 ----UCUGC----AAC----AUCCAGGGUCGCAUUAAGUGUAGACAUUAUUCAUUUUUGAUGAUGAAUUUCCAUGUCUCGCAUGUCUAGGGCUUUU--------CCCUUGCCCA------ ----..(((----.((----.......)).)))....(((.((((((.(((((((......)))))))....))))))))).......((((....--------.....)))).------ ( -24.40) >DroSim_CAF1 126646 94 + 1 ----UCUGC----UAC----AUCCAGGGCCGCAUUAAGUGUAGACAUUAUUCAUUUUUGAUGAUGAAUUUCCAUGUCUCGCAUGUCUAGGGCUUUU--------CCCUUGCCCU------ ----.....----...----....(((((........(((.((((((.(((((((......)))))))....)))))))))......((((.....--------)))).)))))------ ( -26.10) >DroEre_CAF1 122865 95 + 1 ----UCUGC----UAC----AUCCGGGGCCGCAUUAAGUGUAGACAUUAUUCAUUUUUGAUGAUGAAUUUCCAUGUCUCGCAUGUCUAGGGUUUUU--------CCCUCGUCCUC----- ----.....----...----....(((((........(((.((((((.(((((((......)))))))....)))))))))......((((.....--------)))).))))).----- ( -24.80) >DroWil_CAF1 186095 91 + 1 --------------------GGACACAGCCGCAUUAAGUGUAGACAUUAUUCAUUUUUGAUGAUGAAUUUCCAUGUCUCGCAUGUCUAGGGUUUUU--------GCUCC-UCUUUCUCUC --------------------(((((.((((.(.....((((((((((.(((((((......)))))))....)))))).)))).....)))))..)--------).)))-.......... ( -20.90) >DroYak_CAF1 127612 108 + 1 CUUGGUUGC----UACUCGGGUCCAGAGCCGCAUUAAGUGUAGACAUUAUUCAUUUUUGAUGAUGAAUUUCCAUGUCUCGCAUGUCUGGGGUUUUU--------CCCUCGCCUUCCUGUG ...((..((----.....(((...((((((.((....((((((((((.(((((((......)))))))....)))))).))))...)).)))))).--------)))..))...)).... ( -29.00) >DroAna_CAF1 124072 112 + 1 ----UCUGCGCCACAC----AUCCUUGGCCGCAUUAAGUGUAGACAUUAUUCAUUUUUGAUGAUGAAUUUCCAUGUCUCGCAUGUCUAGGGUUUUUUUUCUCCUCCCUCCCCUCCAUCGG ----..(((((((...----.....))).))))....(((.((((((.(((((((......)))))))....)))))))))......((((.............))))............ ( -25.52) >consensus ____UCUGC____UAC____AUCCAGGGCCGCAUUAAGUGUAGACAUUAUUCAUUUUUGAUGAUGAAUUUCCAUGUCUCGCAUGUCUAGGGUUUUU________CCCUCGCCCUC_____ ........................((((((.(.....((((((((((.(((((((......)))))))....)))))).)))).....)))))))......................... (-18.58 = -18.38 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:03 2006