Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,550,930 – 12,551,024 |
Length | 94 |
Max. P | 0.970957 |
Location | 12,550,930 – 12,551,024 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 87.45 |
Mean single sequence MFE | -21.10 |
Consensus MFE | -19.38 |
Energy contribution | -19.46 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.09 |
Mean z-score | -1.85 |
Structure conservation index | 0.92 |
SVM decision value | 1.67 |
SVM RNA-class probability | 0.970957 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12550930 94 - 22407834 ------------UUUCAUUUUGAUCCCAAUGAAGCACAAUUUGUUGCGCCUUACGUGUUGCAAUCAUUCAACAAUUGCGACACUUA----UGAUUAUGUGCACGCCCUCA ------------.((((((........))))))(((((....((........))((((((((((.........))))))))))...----......)))))......... ( -21.20) >DroSec_CAF1 122995 98 - 1 ------------UUUCAUUUUGCUCCCAAUGAAGCACAAUUUGUUGCGCCUUACGUGUUGCAAUCAUUCAACAAUUGCGACACUUAUGUAUGAUUAUGUGCACGCCCUCA ------------.((((((........))))))(((((....(((..((..((.((((((((((.........)))))))))).)).))..)))..)))))......... ( -23.00) >DroSim_CAF1 125834 93 - 1 ------------UUUCAUUUUGUUCCCAAUGAAGCACAAUUUGUUGCGCCUU-CGUGUUGCAAUCAUUCAACAAUUGCGACACUUA----UGAUUAUGUGCACGCCCUCA ------------.((((((........))))))(((((....(.....)...-.((((((((((.........))))))))))...----......)))))......... ( -19.50) >DroEre_CAF1 122057 94 - 1 ------------GUUCAUGCUUGCCCCCAUGAAGCACAAUUUGUUGCGCCUUACGUGUUGCAAUCAUUCAACAAUUGCGACACUUA----UGACUAUGUGCACGCCCUCA ------------.((((((........))))))(((((....((........))((((((((((.........))))))))))...----......)))))......... ( -23.00) >DroYak_CAF1 126618 106 - 1 UCCAAGCAACUAUUUCAUGUCGAUCCCUAUGAAACACAAUUUGUUGCGCCUUACGUGUUGCAAUCAUUCAACAACUGCGACACUCA----UGAUUAUGUGCACGCCCUCA .....(((......(((((...........(.((((.....)))).).......((((((((.............)))))))).))----))).....)))......... ( -18.82) >consensus ____________UUUCAUUUUGAUCCCAAUGAAGCACAAUUUGUUGCGCCUUACGUGUUGCAAUCAUUCAACAAUUGCGACACUUA____UGAUUAUGUGCACGCCCUCA .............((((((........))))))(((((....((........))((((((((((.........)))))))))).............)))))......... (-19.38 = -19.46 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:02 2006