Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,540,555 – 12,540,652 |
Length | 97 |
Max. P | 0.945512 |
Location | 12,540,555 – 12,540,652 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 89.39 |
Mean single sequence MFE | -24.14 |
Consensus MFE | -22.88 |
Energy contribution | -22.60 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.12 |
Mean z-score | -1.55 |
Structure conservation index | 0.95 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.945512 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12540555 97 + 22407834 CACAGCUGUUAAUCGAAUCAAUUCGAUUUGAUUCAGUUUCUACAGUUGGAU---GAUUCGUUUUCGAAAGUAGGCUUGUUGCUUA----AACGUGGUUUCAAAA ..(((((((.(((.(((((((......))))))).)))...)))))))((.---....((((..(....)(((((.....)))))----)))).....)).... ( -25.10) >DroSec_CAF1 112850 94 + 1 CACAGCUGUUAAUCGAAUCAAUUCGAUUUGAUUCAGUUUCUGCAGUUGGAU---GUUUCGUUUUCGAAAGUAGGCUU---GCUUG----AAAGUGGUUUCUAAA ..(((((((.(((.(((((((......))))))).)))...)))))))((.---...(((((((((((((....)))---..)))----)))))))..)).... ( -23.20) >DroSim_CAF1 115441 94 + 1 CACAGCUGUUAAUCGAAUCAAUUCGAUUUGAUUCAGUUUCUGCAGUUGGAU---GUUUCGUUUUCGAAAGUAGGCUU---GCUUG----AAAGUGGUUUUUAAA ..(((((((.(((.(((((((......))))))).)))...)))))))...---...(((((((((((((....)))---..)))----)))))))........ ( -22.90) >DroEre_CAF1 111130 93 + 1 CACAGCUGUUAAUCGAAUCAAUUCGAUUUGAUUCAGUUUCUGCAGUUGGAU---GAUUCGUUUUCGAAAGUAGGCUU---GCCUG-----AUGUGGUUCCAGAA ..(((((((.(((.(((((((......))))))).)))...)))))))...---..((((....))))....((...---(((..-----....))).)).... ( -24.80) >DroYak_CAF1 115469 101 + 1 CACAGCUGUUAAUCGAAUCAAUUCGAUUUGAUUCACUUUCUGCAGUUGGAUGAUGAUUCGUUUUCGAAAGUAGGCUU---GCUUGGCUUGGAGUAGUUUCAGAA ..(((((((.....(((((((......))))))).......)))))))..(((..((((.....(....)((((((.---....))))))))))....)))... ( -24.70) >consensus CACAGCUGUUAAUCGAAUCAAUUCGAUUUGAUUCAGUUUCUGCAGUUGGAU___GAUUCGUUUUCGAAAGUAGGCUU___GCUUG____AAAGUGGUUUCAAAA ..(((((((.(((.(((((((......))))))).)))...)))))))........((((....))))..(((((.....)))))................... (-22.88 = -22.60 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:59 2006