Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,539,651 – 12,539,761 |
Length | 110 |
Max. P | 0.853293 |
Location | 12,539,651 – 12,539,761 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 87.71 |
Mean single sequence MFE | -25.77 |
Consensus MFE | -23.26 |
Energy contribution | -23.07 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.07 |
Mean z-score | -1.66 |
Structure conservation index | 0.90 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.853293 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12539651 110 + 22407834 CAUAAUCGAAUUGGAUUUCAGCGUGCGCAAAGUCUUUAGCAAAUAAUCCAGGAUUGCUAACGAUUCUUGGAUUAUUUGGGGCCACGGAAAAAGU--UAUAA-ACUAUACCAAC ..........((((.((((..((((.((...........((((((((((((((...(....)..))))))))))))))..)))))))))).(((--.....-)))...)))). ( -27.82) >DroPse_CAF1 145125 109 + 1 CAUAAUCGAAUUGGAUUUCAGCGUCCGCAAAGUCUUUAGCAAAUAAUCCAGGAUUGCUAUCGAUUCUUGGAUUAUUUGGGGCCACGAAAGAA-U--UAUUU-AAUAUACUUAA .....(((....((((......)))).....((((....(((((((((((((((((....))).))))))))))))))))))..))).....-.--.....-........... ( -25.00) >DroEre_CAF1 110225 108 + 1 CAUAAUCGAAUUGGAUUUCAGCGUGCGCAAAGUCUUUAGCAAAUAAUCCAGGAUUGCUAACGAUUCUUGGAUUAUUUGGGGCCACGGAAAAAGU--UAC---GCUUUACCAGC ..........((((.......((((.((...........((((((((((((((...(....)..))))))))))))))..))))))...((((.--...---.)))).)))). ( -28.52) >DroYak_CAF1 114559 105 + 1 CAUAAUCGAAUUGGAUUUCAGCGUGCGCAAAGUCUUUAGCAAAUAAUCCAGGAUUGCUUACGAUUCUUGGAUUAUUUGGGGUCACGAAAAAAGU--UAU---UCUAUACC--- .....(((....((((((..((....)).))))))....(((((((((((((((((....))).))))))))))))))......))).......--...---........--- ( -24.70) >DroAna_CAF1 112739 110 + 1 CAUAAUCGAAUUGGAUUUCAGCGUACGCAAAGUUUUCAGCAAAUAAUCCAGGAUUGCUGACGAUUCUUGGAUUAUUUU-UGCCACGAAAGAAAUAUUAUUAUUAUUAACC--C ..((((..(((...(((((..(((..(((((((.....)).(((((((((((((((....))).))))))))))))))-))).)))...)))))...)))...))))...--. ( -23.60) >DroPer_CAF1 143144 109 + 1 CAUAAUCGAAUUGGAUUUCAGCGUCCGCAAAGUCUUUAGCAAAUAAUCCAGGAUUGCUAUCGAUUCUUGGAUUAUUUGGGGCCACGAAAGAA-U--UAUUU-AAUAUACUUAA .....(((....((((......)))).....((((....(((((((((((((((((....))).))))))))))))))))))..))).....-.--.....-........... ( -25.00) >consensus CAUAAUCGAAUUGGAUUUCAGCGUGCGCAAAGUCUUUAGCAAAUAAUCCAGGAUUGCUAACGAUUCUUGGAUUAUUUGGGGCCACGAAAAAAGU__UAUU__AAUAUACC_AC .....(((....((((((..((....)).))))))....(((((((((((((((((....))).))))))))))))))......))).......................... (-23.26 = -23.07 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:58 2006