Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,537,475 – 12,537,595 |
Length | 120 |
Max. P | 0.788241 |
Location | 12,537,475 – 12,537,595 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.19 |
Mean single sequence MFE | -21.68 |
Consensus MFE | -3.96 |
Energy contribution | -3.84 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.32 |
Mean z-score | -1.78 |
Structure conservation index | 0.18 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.788241 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12537475 120 - 22407834 UAAUUGUUUUCAGUAGCAGUUGUUUACUUAAAUUCAAAUAAAUAUUGAAAUCGUAGAAAUGUUCUGCGAACGAACUCUUUAUUAGUCUUAAGAAACUUGACAACAGACACCGCUAACAAU ..((((((..(.((..(.((((((..(((((.(((((.......))))).(((((((.....)))))))..................)))))......)))))).)..)).)..)))))) ( -20.70) >DroSec_CAF1 109796 116 - 1 UAAUUGUUGUUAGUAGCAGUUGUUUACUUAAAUUAAAAUAAAUAUUGAAAUCGUAGAAAUGUUCUGCGA----ACUUCUUUUUAAUCUUAAGAAACUUAACAUGGGACACCGCUAACAAU .....(((((((((....(((((((.((((((((((((........(((.(((((((.....)))))))----..))).))))))).)))))))))..)))..((....))))))))))) ( -25.80) >DroSim_CAF1 112405 116 - 1 UAAUUGUUGUUAGUAACAGUUGUUUAGUUAAAUUAAAAUAAAUAUGGAAAACAUAGAAAUGUUCCGCGA----ACUCUUUAUUAAUCUUAAGAAACUUAACAUGGGACACCGCUAACAAU .....(((((((((......((((.((((................(((..((((....)))))))....----..((((..........)))))))).)))).((....))))))))))) ( -19.60) >DroEre_CAF1 108020 116 - 1 CAAUUGUUAUAAGUGGCAGAUGUUUAUUACAAUUUAAAUAAAUAUUGAGCAAGUAGAAAUGUUAAGGGA----ACCGCUUAUUAAUCUUAAGAAACUUAACAUCAGACGCCACUAACAUA ....((((...((((((.((((((((((........))))))))))......((....((((((((...----....((((.......))))...))))))))...)))))))))))).. ( -26.00) >DroYak_CAF1 112427 94 - 1 AAAUUGUUAUUAGUGGCAGAUGUUUGUUAAAAUGGAAAUAAAUAUUGAGAAAGUAGAAA--------------------------UCUUAAGAAACUUAACAUUGUACACCGCUAACAUU .........(((((((..((((((((((........))))))))))......(((..((--------------------------(.(((((...))))).))).))).))))))).... ( -16.30) >consensus UAAUUGUUAUUAGUAGCAGUUGUUUACUUAAAUUAAAAUAAAUAUUGAAAACGUAGAAAUGUUCUGCGA____ACUCCUUAUUAAUCUUAAGAAACUUAACAUCGGACACCGCUAACAAU .............((((.(.(((((.................((((.....))))................................(((((...)))))....)))))).))))..... ( -3.96 = -3.84 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:56 2006