Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,295,506 – 1,295,597 |
Length | 91 |
Max. P | 0.951018 |
Location | 1,295,506 – 1,295,597 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 93.36 |
Mean single sequence MFE | -18.24 |
Consensus MFE | -14.52 |
Energy contribution | -14.76 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -2.19 |
Structure conservation index | 0.80 |
SVM decision value | 1.41 |
SVM RNA-class probability | 0.951018 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1295506 91 + 22407834 UAAAAAAAAUAAUGCACUCAUGUUUGCAUGGGGAGAAGUCAAAUGAAAUGAAUAUCAAUUUGAUUAAAUGAAGCGUAAUGUUUUUCAACUU ....(((((((((((.((((((....))))))....((((((((((........)).)))))))).......))))..)))))))...... ( -18.20) >DroSec_CAF1 54886 90 + 1 UAAA-AAAAUAAUGCACUCAUGUUUGCAUGGGAAGAAGUCAAAUGAAAUAAAUAUCAAUUUGAUUAAAUGAAGCGUAAUGUUUUUCCAAUU ...(-((((((((((.((((((....))))))....((((((((((........)).)))))))).......))))..)))))))...... ( -18.00) >DroSim_CAF1 55736 90 + 1 UAAA-AAAAUAAUGCACUCAUGUUUGCAUGGGAAGAAGUCAAAUGAAAUGAAUAUCAAUUUGAUUAAAUGAAGCGUAAUGUUUUUCAACUU ...(-((((((((((.((((((....))))))....((((((((((........)).)))))))).......))))..)))))))...... ( -18.00) >DroEre_CAF1 66893 89 + 1 UAAA-AAGAGAAUGCA-UCGUGUUUGCAUGGGAAGAAGUCAAAUGAAAUGAAUAUCAAUUUGAUUUAAUGAAGCGUAAUGUUUCUCAACUU ....-..(((((.(((-(..(((((.(((......(((((((((((........)).))))))))).))))))))..)))))))))..... ( -21.30) >DroYak_CAF1 56885 90 + 1 UAAA-AAGAGAAUGCACUCAUGUCUGCAUGGGAAGAAGUCAAACGAAAUGAAUAUCAAUUUGAUUAAAUGAAGCGUAAUGUUUUUCAGCUU .(((-((.(..((((.((((((....))))))....(((((((.((........))..))))))).......))))..).)))))...... ( -15.70) >consensus UAAA_AAAAUAAUGCACUCAUGUUUGCAUGGGAAGAAGUCAAAUGAAAUGAAUAUCAAUUUGAUUAAAUGAAGCGUAAUGUUUUUCAACUU ...........((((.((((((....))))))....((((((((((........)).)))))))).......))))............... (-14.52 = -14.76 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:13 2006