Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,482,840 – 12,482,937 |
Length | 97 |
Max. P | 0.739801 |
Location | 12,482,840 – 12,482,937 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 85.82 |
Mean single sequence MFE | -23.54 |
Consensus MFE | -16.32 |
Energy contribution | -17.76 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.04 |
Mean z-score | -2.04 |
Structure conservation index | 0.69 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.739801 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12482840 97 - 22407834 -----------ACUAAAACCAGUGUUCGUGCUCUCCCAACUGUUUGUGUGUAUAUCUAAUAUCUAAUAAGAACAAGCAGCUGGGACCUCCGC-AAACAAAUUUGUCAAA -----------...........((((.(((...(((((.((((((((...(((............)))...)))))))).)))))....)))-.))))........... ( -22.60) >DroSec_CAF1 55514 97 - 1 -----------ACUGAAACCAGUGUUCGUGCUCUCCCAACUGUUUGUGUGUAUAUCUAAUAUCUAAUAAGAACAAGCAGCUGGGACCUCCCC-AAACAAAUUUGUCAAA -----------..(((......((((.......(((((.((((((((...(((............)))...)))))))).))))).......-.))))......))).. ( -20.86) >DroSim_CAF1 57380 97 - 1 -----------ACUGAAACCAGUGUUCGUGCUCUCCCAACUGUUUGUGUGUAUAUCUAAUAUCUAAUAAGAACAAGCAGCUGGGACCUCCCC-AAACAAAUUUGUCAAA -----------..(((......((((.......(((((.((((((((...(((............)))...)))))))).))))).......-.))))......))).. ( -20.86) >DroEre_CAF1 52593 102 - 1 CAUGCACAUGCACUGAAACCAGUGUUUUGGCUCUCCCAACUGUGUGUGUGUAUAUC-------UAAUAAGAAAAAGCAGCUGGGACCUCCCCGAAACAAAUUUGUCAAA ..(((....))).(((......((((((((...(((((.((((.......(((...-------..))).......)))).))))).....))))))))......))).. ( -25.04) >DroYak_CAF1 55365 101 - 1 CAUGCACAUGCACUGAAACCAGUGUUUGGGCUCUCCCAACUGUGUGUGUGUAUAUC-------UAAUAAGAAAAAGCAGCUGGGACCUCCCC-AAACAAAUUUGUCAAA ..(((....))).(((......((((((((...(((((.((((.......(((...-------..))).......)))).)))))....)))-)))))......))).. ( -28.34) >consensus ___________ACUGAAACCAGUGUUCGUGCUCUCCCAACUGUUUGUGUGUAUAUCUAAUAUCUAAUAAGAACAAGCAGCUGGGACCUCCCC_AAACAAAUUUGUCAAA .............(((......(((..(((...(((((.((((((((...(((............)))...)))))))).)))))....)))...)))......))).. (-16.32 = -17.76 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:46 2006