Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,482,332 – 12,482,431 |
Length | 99 |
Max. P | 0.500000 |
Location | 12,482,332 – 12,482,431 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 83.65 |
Mean single sequence MFE | -17.98 |
Consensus MFE | -13.38 |
Energy contribution | -13.54 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.07 |
Mean z-score | -1.51 |
Structure conservation index | 0.74 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12482332 99 + 22407834 UUUUUUCUCUCGGAAUGACCUCUUGGCAGGUUGCUAUCAGCUUGGACAAUAACCCCGUCU-----UAUCUAACCAAUGCUUGUUUUCCCACACGCUAUUUUUAC ...........((((.(((..((((((((((((....)))))))(((.........))).-----.......)))).)...)))))))................ ( -13.90) >DroSec_CAF1 55005 98 + 1 -UUUUUCUCUCGGAAUGACCUCUUGCCAGGUUGCUAUCAGCUUGGACAAUAACCCCGUCU-----UAUCUAACCAAUGCUUGUUUUCCCACAGGCUAUUUUUAC -..........(((..(((...(((((((((((....)))))))).))).......))).-----..))).......((((((......))))))......... ( -19.20) >DroSim_CAF1 56882 98 + 1 -UUUUUCUCUCGGAAUGACCUCUUGCCAGGUUGCUAUCAGCUUGGACAAUAACCCCGUCU-----UAUCUAACCAAUGCUUGUUUUCCCACAGGCUAUUUUUAA -..........(((..(((...(((((((((((....)))))))).))).......))).-----..))).......((((((......))))))......... ( -19.20) >DroEre_CAF1 52092 104 + 1 UUUUUUUUCUCGGGUUGACCUCUGCCCAGGUUGUUAUCAGCUUGGACAAUAACCCCCUUUCUAUCUAUAUAACCAAUGUUUGCUUUCCCACAGGCUAUUUUUAA ...........((((((.....((.((((((((....)))))))).)).))))))......................(((((........)))))......... ( -19.70) >DroYak_CAF1 54891 83 + 1 UUUUCUU--UCGGGAUGACCUUU-UCCAGGUUGUUAUCAGCUUGGACAAUAACCC------------------CAAUGUUUGCUUUCCCACAGGCUAUUUUUAC .......--..(((.........-(((((((((....))))))))).......))------------------)...(((((........)))))......... ( -17.89) >consensus UUUUUUCUCUCGGAAUGACCUCUUGCCAGGUUGCUAUCAGCUUGGACAAUAACCCCGUCU_____UAUCUAACCAAUGCUUGUUUUCCCACAGGCUAUUUUUAC ...........((.....)).....((((((((....))))))))................................(((((........)))))......... (-13.38 = -13.54 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:45 2006