Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,481,364 – 12,481,457 |
Length | 93 |
Max. P | 0.983971 |
Location | 12,481,364 – 12,481,457 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 72.14 |
Mean single sequence MFE | -21.98 |
Consensus MFE | -12.55 |
Energy contribution | -12.18 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.40 |
Mean z-score | -2.18 |
Structure conservation index | 0.57 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.983971 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12481364 93 - 22407834 GAGAUUACA----------AUUGUUUGCAUAAGCAGGGUACUAGGUGACAAGUAUGGCAGAGGAAAAUUUAAUCCAAGUAAAUUAAUUUCAACGGAUUUUCAU (((((((..----------...((((((....((...(((((.(....).))))).))...(((........)))..)))))))))))))............. ( -19.30) >DroSec_CAF1 54067 90 - 1 ---AUUACA----------AUUGUUUGACUAAGCAGGGUACUGGGUGACCAGUGUUGCAAAGGAAAACUAAAUCCCAGAAAAUUAAUUUCAACGGAUUUUUAU ---......----------...((((..((..((((..((((((....))))))))))..))..)))).((((((..((((.....))))...)))))).... ( -24.00) >DroSim_CAF1 55943 90 - 1 ---AUUACA----------AUUGUUUGACUAAGCAGGGUACUGGGUGACCAGUGUUGCAAAGGAAAACUAAAUCCCAGAAAAUUAAUUUCAACGGAUUUUUAU ---......----------...((((..((..((((..((((((....))))))))))..))..)))).((((((..((((.....))))...)))))).... ( -24.00) >DroEre_CAF1 51083 90 - 1 GAGAAUAUAUAUGUGCAUAAAUGGUUGAUCUCGCCGGGUAUUGGGUGACCAGUAUGGUAG-------------CCGUGCAAAUGAAUUUAAACGGAUUUUUAU ((((.....(((........))).....))))(((..(((((((....))))))))))..-------------((((..(((....)))..))))........ ( -20.60) >consensus ___AUUACA__________AUUGUUUGACUAAGCAGGGUACUGGGUGACCAGUAUGGCAAAGGAAAACUAAAUCCCAGAAAAUUAAUUUCAACGGAUUUUUAU ................................((((..((((((....))))))))))............................................. (-12.55 = -12.18 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:44 2006