Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,473,140 – 12,473,231 |
Length | 91 |
Max. P | 0.995990 |
Location | 12,473,140 – 12,473,231 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 93.83 |
Mean single sequence MFE | -28.40 |
Consensus MFE | -26.40 |
Energy contribution | -26.00 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.14 |
Mean z-score | -1.82 |
Structure conservation index | 0.93 |
SVM decision value | 2.64 |
SVM RNA-class probability | 0.995990 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12473140 91 - 22407834 GCCGUUGUUGGCGCUGCGUGUCUAUCAGUAGAUCUAGUCUGGUCUAUAGUUUAUAGCUCGCACAGUUCUAGCGAUGGACUCGUGACUUCAA .((((((((((.((((.(((.(((((.(((((((......))))))).)...))))..))).)))).)))))))))).............. ( -31.30) >DroSec_CAF1 45823 91 - 1 GCCUUUGUUGGCGCUGCGUGUCUAUCAGUAGAUCUAGUCUGGUCUAUAGUUUAUAGCUCUCACAGUUCUAGCGAUGGACUCGUGACUUCAA (((......)))(..(((.(((((((.(((((((......))))))).(((...((((.....))))..)))))))))).)))..)..... ( -28.90) >DroSim_CAF1 47705 91 - 1 GCCUUUGUUGGCGCUGCGUGUCUAUCAGUAGAUCUAGUCUGGUCUAUAGUUUAUAGCUCUCACAGUUCUAGCGAUGGACUCGUGACUUCAA (((......)))(..(((.(((((((.(((((((......))))))).(((...((((.....))))..)))))))))).)))..)..... ( -28.90) >DroEre_CAF1 42805 88 - 1 GCC---GUUGGUGCUCCGUGUCUAUCAGUAGAUCUAGUCUGGUCUGUAGUUUAUGGCCCUCACAGCUCUAGCGAUGGACUCGUGACUUCAA ...---.((((.(.((((.(((((((..((((.((.((..((.(((((...))))).))..)))).))))..))))))).)).))).)))) ( -22.90) >DroYak_CAF1 45782 88 - 1 GCC---GUUGGCGCGGCGUGUCUAUCAGUAGAUCUAGUCUGGUCUAUAGUUUAUGGCUCUCACAGCUCUAGCGAUGGACUCGUGACUUCAA (((---((....)))))(.(((((((.(((((((......))))))).(((...((((.....))))..)))))))))).).......... ( -30.00) >consensus GCC_UUGUUGGCGCUGCGUGUCUAUCAGUAGAUCUAGUCUGGUCUAUAGUUUAUAGCUCUCACAGUUCUAGCGAUGGACUCGUGACUUCAA (((......)))(..(((.(((((((.(((((((......))))))).(((...((((.....))))..)))))))))).)))..)..... (-26.40 = -26.00 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:43 2006