Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,462,656 – 12,462,770 |
Length | 114 |
Max. P | 0.559148 |
Location | 12,462,656 – 12,462,770 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 87.84 |
Mean single sequence MFE | -31.98 |
Consensus MFE | -23.91 |
Energy contribution | -24.48 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.12 |
Mean z-score | -1.47 |
Structure conservation index | 0.75 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559148 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12462656 114 + 22407834 AAGGGCGGUCGCGGAAGCUGAGAGUGCUGAGUAAAAAGAGGCAUCUGUUGAAGUUUUUUUUUU----UUGAGGAACUUAAGGGGCUCUAAUUGCCUUAAUGGAGAAAAACGAUUCCGG .((((((((.((....))..(((((.((((((((((((((((.((....)).)))))))))).----.......))))..)).))))).))))))))..(((((........))))). ( -31.20) >DroSec_CAF1 35650 118 + 1 AAGGGCGGACGCGGAAGCUGAGAGUGCUGAGUAAAAAGAGGCAUCUGUUGAAGUUUUGUUUUUUCAUUUGAGGAACUUAAGGCGCUCUAAUUGCCUUAAUGGAGAAAAACGAUUCCGG .(((((((..((....))..((((((((((((.....(((((.((....)).)))))...(((((....)))))))))..))))))))..)))))))..(((((........))))). ( -33.70) >DroSim_CAF1 36779 118 + 1 AAGGGCGGACGCGGAAGCUGAGAGUGCUGAGUAAAAAGAGGCAUCUGUUGAAGUUUUGUUUUUUCAUUUGAGGAACUUAAGGCGCUCUAAUUGCCUUAAUGGAGAAAAACGAUUCCGG .(((((((..((....))..((((((((((((.....(((((.((....)).)))))...(((((....)))))))))..))))))))..)))))))..(((((........))))). ( -33.70) >DroYak_CAF1 35368 111 + 1 AAGGGCGGUCUCGGAAGCUGAGAGCGCUGAGUAAAA-GGGGCGAGUGUUUGAGGUUAU------UUUUUAAGGAACUUAAGGGGCUCUAAUUGCCUUAAUGGAGAAAACCUAUUCCGG ...((((.((((((...)))))).))))(((((...-(((((((((.(((.(((((.(------(....))..))))).))).)))).....)))))...((......)))))))... ( -29.30) >consensus AAGGGCGGACGCGGAAGCUGAGAGUGCUGAGUAAAAAGAGGCAUCUGUUGAAGUUUUGUUUUU_CAUUUGAGGAACUUAAGGCGCUCUAAUUGCCUUAAUGGAGAAAAACGAUUCCGG .(((((((..((....))..((((((((.........(((((.((....)).)))))..........(((((...)))))))))))))..)))))))..(((((........))))). (-23.91 = -24.48 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:40 2006