| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,285,069 – 1,285,170 |
| Length | 101 |
| Max. P | 0.530524 |
| Location | 1,285,069 – 1,285,170 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 68.12 |
| Mean single sequence MFE | -29.37 |
| Consensus MFE | -7.84 |
| Energy contribution | -8.53 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.27 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.530524 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1285069 101 + 22407834 -CGUAACAUUCCUCGUUAGUGGUCUUAUAAGGCCCGUGUGCCCUCAUGGGUUAAGGACUAGAAAAGGGUCCUUGGCCGCCGUCCAAUCCAAGCACCUCCAAU -..((((.......))))((((((......((((((((......))))))))(((((((.......)))))))))))))....................... ( -28.50) >DroPse_CAF1 65482 91 + 1 AAAAGGUAUUCCUCGUUUC--------CACAUACCGCGCCCAUUCCAGGGUUAAUCGUUAGGCAAAAGCCUCCAUCCUUGGG---UGAGGAACACCUCAAAU ...((((.(((((((..((--------((........((((......))))........((((....)))).......))))---))))))).))))..... ( -26.60) >DroSec_CAF1 44445 101 + 1 -CGUUACAUUCCUUGUUAGUGGGCUUAUAAAGCCCGUGUGCCCUCAUGGGUUAAGGACUAGAAAAGGGUCCUUCACCACCGCCCAAUCCAAGCACCUCCAAU -..........((((....(((((......((((((((......))))))))(((((((.......))))))).......)))))...)))).......... ( -31.20) >DroSim_CAF1 45686 101 + 1 -CGUUACAUUCCUUGUUAGUGGGCUUAUAAAGCCCGUGUGCCCUCAUGGGUUAAGGACUAGAAAAGGGUCCUUGGCCACCGCCCAAUCCAAGCACCUCCAAU -..........((((....(((((..........((((......))))(((((((((((.......)))))))))))...)))))...)))).......... ( -31.80) >DroEre_CAF1 56438 88 + 1 ---UUUUAUUCCUCGUUACUGGGCUUGUGAAUCCCGUGUGCGCUCAUGGGUUAACGGCUAGGAAAGGGUGCUCAG-----------CCCAAGCACCUCCAAU ---.....(((((........((((.((....((((((......))))))...))))))))))).(((((((...-----------....)))))))..... ( -26.40) >DroYak_CAF1 46264 90 + 1 -UAUUUCAUUCCUCGUUACUGG-----------CCGUGUGCCCUCAUGGGUUAACGGCUAGAUGAGGGUCCUCAGCCAGUGCCCAACCCAAGCACCUCCAAU -........(((((((..((((-----------((((..((((....))))..)))))))))))))))..........((((.........))))....... ( -31.70) >consensus _CGUUACAUUCCUCGUUACUGGGCUUAUAAAGCCCGUGUGCCCUCAUGGGUUAAGGACUAGAAAAGGGUCCUCAGCCACCGCCCAAUCCAAGCACCUCCAAU ..............(((..(((..........((((((......)))))).....((((.......)))).................))))))......... ( -7.84 = -8.53 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:12 2006