Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,462,061 – 12,462,162 |
Length | 101 |
Max. P | 0.930964 |
Location | 12,462,061 – 12,462,162 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 78.02 |
Mean single sequence MFE | -17.98 |
Consensus MFE | -11.34 |
Energy contribution | -14.10 |
Covariance contribution | 2.76 |
Combinations/Pair | 1.12 |
Mean z-score | -2.07 |
Structure conservation index | 0.63 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.930964 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12462061 101 - 22407834 GUUCCAAUUUUGUCAUUGUCAUUGAUAUUAUAAUGCUGCGAUAAAAAUCCAGAAUGUGAUAUUCUGUUCAAUGACAAUACAUAUUUUACUGUUACCC-------AUAU .........(((((((((.....(((((((((...(((.(((....))))))..))))))))).....)))))))))....................-------.... ( -21.30) >DroSec_CAF1 35060 101 - 1 GUUCCAAUUUUGUCAUUGUCAUUGGUAUUAUAAUGCUGCGAUAAAAAUCCAGAAUGUGAUAUUCUGUUCAAUGACAAUACUCAUUUUACUUUUACCC-------AUAU .........(((((((((.....(((((((((...(((.(((....))))))..))))))))).....)))))))))....................-------.... ( -20.80) >DroSim_CAF1 36189 101 - 1 GUUCCAAUUUUGUCAUUGUCAUUGGUAUUAUAAUGCUGCGAUAAAAAUCCAGAAUGUGAUAUUCUGUUCAAUGACAAUACUCAUUUUACUUUUACCC-------AUAU .........(((((((((.....(((((((((...(((.(((....))))))..))))))))).....)))))))))....................-------.... ( -20.80) >DroEre_CAF1 32173 100 - 1 GUUCCAAUUUUGUCAUUGUCAUUGGUAUUAU-AAGCAACGAUAAAAAUCCCGUGUAUUAUAUUUUAUUCAAUGAC-------AUAUUACUUUAGCCCACAUACCCUAC ................(((((((((((.(((-((...(((..........)))...)))))...)).))))))))-------)......................... ( -13.90) >DroYak_CAF1 34791 90 - 1 GUUCCAAUUUUCUCAUUGUCAUUGGUACUGA-AUGCUACGAUAAAAGUCCCGAGU---AUAUUUUAUUCAAUGA--------------CUUUAACCCACAUACCAUAU .................((((((((....((-(((((..(((....)))...)))---)).))....)))))))--------------)................... ( -13.10) >consensus GUUCCAAUUUUGUCAUUGUCAUUGGUAUUAUAAUGCUGCGAUAAAAAUCCAGAAUGUGAUAUUCUGUUCAAUGACAAUAC__AUUUUACUUUUACCC_______AUAU .........(((((((((.....(((((((((...(((.(((....))))))..))))))))).....)))))))))............................... (-11.34 = -14.10 + 2.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:39 2006