Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,457,003 – 12,457,098 |
Length | 95 |
Max. P | 0.543597 |
Location | 12,457,003 – 12,457,098 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 74.32 |
Mean single sequence MFE | -15.45 |
Consensus MFE | -6.90 |
Energy contribution | -7.90 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.20 |
Mean z-score | -1.82 |
Structure conservation index | 0.45 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543597 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12457003 95 - 22407834 CCAAAAGCUGGCUGCAAAAUAAUACUUGACGAAAGUAAAAUUUUUGGCCAACGGGGAAAAAGAGCAGCAGAAAAUGCAAAAAUACAAAUCGAUAA ......((..(((((.......(((((.....)))))...(((((..((.....))..)))))))))).......)).................. ( -17.10) >DroSec_CAF1 29843 93 - 1 UCAA-GCUUGGCUGCUAAAUAAUACUUGACGAAAGUAAAAUUUUUGGCCAACAGAGAAAAACAGCAG-AGGAAAUACAAAAAUACAAAUCGAUAA ....-.(((.((((........(((((.....)))))...((((((.....))))))....)))).)-))......................... ( -13.90) >DroSim_CAF1 29165 93 - 1 UCAA-GCUUGGCUGCUAAAUAAUACUUGACGAAAGUAAAAUUUUUGGCCAACAGAGAAAAACAGCAG-AGGAAAUACAAAAAUACAAAUCGAUAA ....-.(((.((((........(((((.....)))))...((((((.....))))))....)))).)-))......................... ( -13.90) >DroEre_CAF1 26958 90 - 1 CCAA-GC-UGGCUGCAAAAUAAUACUUGAUGAAAGUAAAAUUUUUGGCCAACGGAGAAAAACAGCAG-CAGAAAUUCA--AAUACAAAUCGAUAA ....-..-..(((((.......(((((.....)))))...((((((.....))))))......))))-).........--............... ( -15.40) >DroYak_CAF1 29492 90 - 1 GUAA-GC-UGGCUGCAAAAUAAUACUUGAUGAAAGUAGAAUUUUUGGCCAACGGAGAAAAACAGCAG-CAGAAAUACA--AAUGCAAAUCGAUAA (((.-.(-((.((((.......(((((.....)))))...((((((.....))))))......))))-)))...))).--............... ( -17.40) >DroMoj_CAF1 31079 73 - 1 UUU-GAAUUGGCUUCAAAGAAAUACUUAAAUAUUGUAAAA-----------AGUAGAAUUUGAGCCG-CGC---------AAUGUGCAUGGGUAG ...-.....((((.((((....(((((............)-----------))))...))))))))(-(((---------...))))........ ( -15.00) >consensus UCAA_GCUUGGCUGCAAAAUAAUACUUGACGAAAGUAAAAUUUUUGGCCAACGGAGAAAAACAGCAG_AGGAAAUACA__AAUACAAAUCGAUAA ..........((((........(((((.....)))))...((((((.....))))))....)))).............................. ( -6.90 = -7.90 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:34 2006