Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,456,859 – 12,456,959 |
Length | 100 |
Max. P | 0.911806 |
Location | 12,456,859 – 12,456,959 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 81.15 |
Mean single sequence MFE | -13.13 |
Consensus MFE | -9.70 |
Energy contribution | -10.20 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.40 |
Structure conservation index | 0.74 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.911806 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12456859 100 - 22407834 -ACAGAAGGGAAAAUAAAUGAAAUAAUAUGUGAUAAUUUGCAUUGUGCAGUCAGAGACAUAAGAUGUAAAUUGUAAAAAAAAAAAACAAAAGCAAACCCGA -......(((...(((.((......)).))).((((((((((((.....(((...)))....))))))))))))......................))).. ( -15.00) >DroPse_CAF1 34617 92 - 1 UAAAGAAAGGAAAUGUAAAGAAA-AAUAUGUGAUAAUUUGCAUUGUGCAGUCAGAGACAUAAGAUGUAAAUUGUAAAA-----AAGCAAA---UAACAAGA .......................-....(((.((((((((((((.....(((...)))....))))))))))))....-----..)))..---........ ( -11.90) >DroSim_CAF1 29026 95 - 1 -ACAGAUGGGAAAAUAAAUGAAAUAAUAUGUGAUAAUUUGCAUUGUGCAGUCAGAGACAUAAGAUGUAAAUUGUAAAA-----AAACAAAAGCAAACCCGA -.....((((...(((.((......)).))).((((((((((((.....(((...)))....))))))))))))....-----.............)))). ( -15.10) >DroEre_CAF1 26817 98 - 1 -ACAGAAGGGAAAUUAAAUGAAAUAAUAUGUGAUAAUUUGCAUUGUGCAGUCAGAGACAUAAGAUGUAAAUUGUAAAAA--AAAAACAAAAGCAAACCCGA -......(((..((((.......)))).....((((((((((((.....(((...)))....)))))))))))).....--...............))).. ( -14.90) >DroWil_CAF1 33674 81 - 1 -GUA---G-GAA--------AGAGAAUAUGUGAUAAUUUGCAUUGUGCA------GACAUAAGAUGUAAAUUGUAAAAAA-GAAAACAACAACAAGCAAGA -...---.-...--------............(((((((((((((((..------..)))..))))))))))))......-.................... ( -10.00) >DroPer_CAF1 33835 92 - 1 UAAAGAAAGGAAAUGUAAAGAAA-AAUAUGUGAUAAUUUGCAUUGUGCAGUCAGAGACAUAAGAUGUAAAUUGUAAAA-----AAGCAAA---UAACAAGA .......................-....(((.((((((((((((.....(((...)))....))))))))))))....-----..)))..---........ ( -11.90) >consensus _ACAGAAGGGAAAUUAAAUGAAAUAAUAUGUGAUAAUUUGCAUUGUGCAGUCAGAGACAUAAGAUGUAAAUUGUAAAA_____AAACAAAAGCAAACAAGA ................................((((((((((((.....(((...)))....))))))))))))........................... ( -9.70 = -10.20 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:33 2006