Locus 4344

Sequence ID 2L_DroMel_CAF1
Location 12,454,797 – 12,454,895
Length 98
Max. P 0.636814
window6844

overview

Window 4

Location 12,454,797 – 12,454,895
Length 98
Sequences 3
Columns 98
Reading direction reverse
Mean pairwise identity 92.86
Mean single sequence MFE -25.30
Consensus MFE -24.85
Energy contribution -24.63
Covariance contribution -0.22
Combinations/Pair 1.12
Mean z-score -1.38
Structure conservation index 0.98
SVM decision value 0.21
SVM RNA-class probability 0.636814
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12454797 98 - 22407834
UUGCGAUUUGCUUGUUUAGCUGAUUUACUCGCAGCUUGGACCAAAUCAUAAAAUUUCCCAAGCUAAGUAAAGACGCCACAUGCUUAGCAGCUGCCUCC
..((((((((...(((((((((.........)))).)))))))))))..............((((((((...........)))))))).))....... ( -22.80)
>DroSec_CAF1 27654 98 - 1
UUGCGAUUUGGUUGUUUAGCUUAUUGACACGCAGUUUGGACCAAAUCAUAAAAUUUCCCAGGCCAAGUAAAGACGCCACAUGCUUGGCAGCUGCCUCC
..(((((((((((....((((...........))))..)))))))))..............((((((((...........)))))))).))....... ( -23.80)
>DroSim_CAF1 26967 98 - 1
UUGCGAUUUGGUUGUUUAGCUGAUUGACGCGCAGCUUGGACCAAAUCAUAAAAUUUUCCAAGCCAAGUAAAGACGCCACAUGCUUGGCAGUUGCCUCC
..(((((((((((....(((((.........)))))..)))))))))..............((((((((...........))))))))....)).... ( -29.30)
>consensus
UUGCGAUUUGGUUGUUUAGCUGAUUGACACGCAGCUUGGACCAAAUCAUAAAAUUUCCCAAGCCAAGUAAAGACGCCACAUGCUUGGCAGCUGCCUCC
..(((((((((((....(((((.........)))))..)))))))))..............((((((((...........)))))))).))....... (-24.85 = -24.63 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:32 2006