Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,454,637 – 12,454,757 |
Length | 120 |
Max. P | 0.667558 |
Location | 12,454,637 – 12,454,757 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.78 |
Mean single sequence MFE | -35.30 |
Consensus MFE | -21.41 |
Energy contribution | -21.30 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.08 |
Mean z-score | -2.34 |
Structure conservation index | 0.61 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.667558 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12454637 120 - 22407834 ACAUGGUGUCGGAUUGAAUGGGCGUACAAUUGAUCACCGGAAAACUGGUGUUGGCCGAAAUCACGUUGGCCAAACUAUUUAAUCGCUCGUCGACGGUCACGAAUACCAGAUUAUUAAUCA ...(((((((((((((.(((((((..........((((((....))))))((((((((.......))))))))..........)))))))...))))).)).))))))(((.....))). ( -39.70) >DroSec_CAF1 27494 120 - 1 ACAUGGUGUCGGACCUAAGGGGCGUACAAUUGAUCACCGGAAAACUGGUGUUGGCCGAAAUCAAGUUGGCCACACUAUUUAAUCGCUCGUCGACGGUCACGAAUACCAGAUUAUCAAUCA ...((((((((((((..(.(((((..........((((((....)))))).(((((((.......)))))))...........))))).)....)))).)).))))))(((.....))). ( -38.60) >DroSim_CAF1 26834 99 - 1 GCG---------------------UACAAUUGAUCACCGGAAAACUGGUGUUGGCCGAAAUCACGUUGGCCGAACUAUUUAAUCGGUCGUCGACGGUCACGAAUACCAAAUUAUCAAUCA .((---------------------(((..(((((.(((((..((.((((.((((((((.......)))))))))))).))..))))).)))))..)).)))................... ( -27.60) >consensus ACAUGGUGUCGGA___AA_GGGCGUACAAUUGAUCACCGGAAAACUGGUGUUGGCCGAAAUCACGUUGGCCAAACUAUUUAAUCGCUCGUCGACGGUCACGAAUACCAGAUUAUCAAUCA ............................((((((((((((....))))))((((((((.......)))))))).........(((.(((....)))...)))..........)))))).. (-21.41 = -21.30 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:31 2006