Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,449,584 – 12,449,699 |
Length | 115 |
Max. P | 0.843665 |
Location | 12,449,584 – 12,449,699 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.76 |
Mean single sequence MFE | -41.48 |
Consensus MFE | -25.52 |
Energy contribution | -24.50 |
Covariance contribution | -1.02 |
Combinations/Pair | 1.44 |
Mean z-score | -1.69 |
Structure conservation index | 0.62 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843665 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12449584 115 + 22407834 UUAA-----ACAUACAGAUUGGCUGCUGGUGGCCAGUGGAUUAUUCCAGGCGGUCUUUGCGUUGGCUUUCGCCUACUGGGCGGACGUCUAUCAUCCCAUCAAAUGGCUGGUGGGAACUCU ...(-----((.((.((((((.(((((((...)))))(((....))))).)))))).)).)))(((.((((((.....)))))).))).....((((((((......))))))))..... ( -41.30) >DroVir_CAF1 24576 120 + 1 UUAUUUUGUGCACACAGAUUGGCUUUUGGUCAGCAGUGGAUUAUUCCAGGCGGUGUUCGCCUUGGCCUUCGCCUACUGGGCGGACGUCUAUCAUCCGAUCAAGUGGCUGGUCGGAACCCU ......(((....)))(((..((((((((((.((..((((....)))).))(..((((((((.(((....)))....))))))))..)........))))))).)))..)))........ ( -44.60) >DroPse_CAF1 29534 113 + 1 UUAC-----CC--AUAGAUUGGCUACUGGUGACUAGCGGCCUGUGCCAGGCUGUGUUUGCCUUGGUGUUCGCCUUCUGGGCGGAUGUCUUCCAUCCGAUCAAGUGGCUGGUGGGCACGUU ...(-----((--((.....(((((((((..(...((((((((...))))))))..)..))..((..((((((.....))))))..)).............))))))).)))))...... ( -45.40) >DroWil_CAF1 28417 110 + 1 U----------UUUCAGAUUGGCUAUUGGUUAGCAGUGGGAUAUUUCAGGCUGUCUUUGCCUUGGUCUUUGCCUUUUGGGCCGAAGUCUUUCAUCCCAUUAAGUGGUUGGUGGGAACAUU .----------.....((..((((...(((.((((((..((....))..)))).))..)))(((((((.........)))))))))))..)).(((((((((....)))))))))..... ( -33.40) >DroMoj_CAF1 26326 108 + 1 U------------GCAGAUUGGCUUCUGGUCAGCAGUGGCCUAUUCCAGGCGGUGUUUGCCUUGGCCUUUGCCUACUGGGCGGACGUCUACCAUCCGAUCAAGUGGCUGGUGGGUACGCU .------------...((..((((.(((.....))).))))...))..((((..((((((((.(((....)))....)))))))).(((((((.(((......))).)))))))..)))) ( -40.60) >DroAna_CAF1 25783 116 + 1 GUAA---C-UCACCUAGAUUGGCUUCUGGUUACCAGUGGCCUGUGCCAGGCAGUUUUCGCACUGGCCUUCGCCUACUGGGCGGAUGUCUACCAUCCCAUUAAGUGGCUGGUGGGGACUCU ....---(-(((((..((..((((.((((...)))).))))...(((((((.......)).)))))..))(((.(((..(.(((((.....))))))....)))))).))))))...... ( -43.60) >consensus UUA_______CA_ACAGAUUGGCUUCUGGUCACCAGUGGCCUAUUCCAGGCGGUGUUUGCCUUGGCCUUCGCCUACUGGGCGGACGUCUACCAUCCCAUCAAGUGGCUGGUGGGAACGCU ...................(((...(((.....))).(((....)))(((((...(((((((.(((....)))....)))))))))))).)))((((((((......))))))))..... (-25.52 = -24.50 + -1.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:28 2006