Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,443,902 – 12,444,022 |
Length | 120 |
Max. P | 0.500000 |
Location | 12,443,902 – 12,444,022 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.94 |
Mean single sequence MFE | -35.15 |
Consensus MFE | -20.09 |
Energy contribution | -20.35 |
Covariance contribution | 0.26 |
Combinations/Pair | 1.39 |
Mean z-score | -1.67 |
Structure conservation index | 0.57 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12443902 120 - 22407834 UCAUGCUCUCGCUUAUCCUCUCCUACAUCGGUGGUCAGCGGAAUCGUCCCCGUUGGAUUGCCUGGGGCAUUGUCUUCUGCGGCCUGUCCUGCUACAUACUCGUCCUGCCUCAUUUCAUCU ....((....)).................((..((((((((........))))).)))..))(((((((.((......((((......))))........))...)))))))........ ( -28.34) >DroVir_CAF1 15264 120 - 1 UAAUGCUGUCGCUGAUAUUAUCCUAUAUCGGUGGGCAGCGCAAUCGGCCGAUGUGGAUAGCCUGGGGCAUUAUGCUCUGCGGCGUAUCCUGUUUUAUUCUGGUGCUGCCCCAUUUCAUCU ..........((((((((......))))))))(((((((((.(((....)))..((((((((((((((.....)))))).))).)))))............))))))))).......... ( -45.20) >DroGri_CAF1 19558 120 - 1 UAAUGCUAUCGCUGAUCUUAUCCUAUAUCGGUGGACAGCGCAAUCGUCCGCGCUGGAUCGCCUGGGGUAUUGUGCUCUGCGGCAUAUCCUGCUAUAUACUCGUCCUGCCCCAUUUCAUCU ....((..((((((((.(......).)))))))).((((((........))))))....)).(((((((..(((....((((......))))....)))......)))))))........ ( -33.40) >DroWil_CAF1 17340 120 - 1 UAAUGUUAUCUCUGAUAUUAUCGUAUAUUGGAGGACAACGUAAUCGUCCACGUUGGAUAGCCUGGGGCAUUGUAUUUUGUGGUCUAUCCUGCUAUAUUUUGGUUCUUCCUCACUUUAUCU ........((((..((((......))))..)))).((((((........))))))(((((..(((((((..((((...(..(......)..).))))..))......)))))..))))). ( -27.40) >DroMoj_CAF1 17933 120 - 1 UAUUGCUGUCACUGAUCCUAUCCUAUAUCGGUGGCCAGCGCAAUCGUCCACGCUGGAUCGCCUGGGGCAUUGUGCUCUGCGGCAUAUCCUGUUUCAUAUUGGUUCUGCCGCACUUUAUCU .......(((((((((..........))))))))).((((((((.((((..((......))...)))))))))))).(((((((...((.((.....)).))...)))))))........ ( -40.40) >DroAna_CAF1 19663 120 - 1 UCAUGCUCUCCCUCAUCCUAUCCUAUAUUGGCGGUCAACGGAAUCGCCCGCGUUGGAUAGCCUGGGGCAUAGUGUUCUGCGGGCUAUCCUGCUACAUCCUCUGCCUGCCACACUUCAUCU ..........(((((..((((((......(((((((....).))))))......))))))..)))))...(((((...((((((..................)))))).)))))...... ( -36.17) >consensus UAAUGCUAUCGCUGAUCCUAUCCUAUAUCGGUGGACAGCGCAAUCGUCCGCGUUGGAUAGCCUGGGGCAUUGUGCUCUGCGGCCUAUCCUGCUACAUACUCGUCCUGCCCCACUUCAUCU ........((((((((..........)))))))).((((((........))))))(((....(((((((.........((((......)))).............)))))))....))). (-20.09 = -20.35 + 0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:27 2006