Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,424,731 – 12,424,841 |
Length | 110 |
Max. P | 0.993090 |
Location | 12,424,731 – 12,424,841 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 77.40 |
Mean single sequence MFE | -29.50 |
Consensus MFE | -19.46 |
Energy contribution | -19.34 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.24 |
Mean z-score | -2.50 |
Structure conservation index | 0.66 |
SVM decision value | 2.37 |
SVM RNA-class probability | 0.993090 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12424731 110 - 22407834 AAAUUCAUCUGGCAACUCUCGUUCGAACAGCCAGCAUAUUUCCAGCUCUGUAAAAUUAACAGAAAUGUUAAGAAC----CUACUGCUGCCAGGUGGCGCUAGUAUCAGCGUCUU .....(((((((((.(....((((..((((..(((.........)))))))....((((((....))))))))))----.....).)))))))))(((((......)))))... ( -33.90) >DroSec_CAF1 248229 110 - 1 AAAUUCAUCUGGCAACUCUCGUUCAAACAGCCAGCCUAUUUCCAGCUCUGUAAAAUUAACAGAAAUGUUAAUAAU----GUAUUGCCGCUAGAUGGCGCUAGUAUCAGCUUCUU ....(((((((((.............((((..(((.........)))))))...(((((((....)))))))...----........))))))))).(((......)))..... ( -25.40) >DroSim_CAF1 256098 110 - 1 AAAUUCAUCUGGCAACUCUCGUUCAAACAGGCAGCAUAUUUCCAGAUCUGUAAAACUAACAGAAAUGUUAAUAAC----GUACUGCUGCUAGAUGGCGCUAGUAUCAGCUUCUU ....(((((((((.......((....)).(((((..((((..((..(((((.......)))))..))..))))..----...)))))))))))))).(((......)))..... ( -26.90) >DroEre_CAF1 247014 99 - 1 AAAUCCAUCUGGCAACUUUGAAUCACAAUG--------------GCUCUGUACAACUUACAGAAAUGUUAGGAACAGCAGCAGUGC-GCUAGGUGGCGCUAGUGUCAGCUCCUU ....(((((((((.((((((.....)))..--------------(((((((....((.(((....))).))..)))).))))))..-))))))))).(((......)))..... ( -28.00) >DroYak_CAF1 257648 96 - 1 AAAUCCAUCUGGCAACCUUGGUUCGCAAAG--------------GCUCUGUAAAACUUACAGAAAUGUUGGGAAC----GCAUUGCUGCUAGGUGGCGCUAGUGACAGCUUCUU ....((((((((((.(..((((((.(((..--------------..((((((.....))))))....))).))))----.))..).)))))))))).(((......)))..... ( -33.30) >consensus AAAUUCAUCUGGCAACUCUCGUUCAAACAG_CAGC_UAUUUCCAGCUCUGUAAAACUAACAGAAAUGUUAAGAAC____GUACUGCUGCUAGGUGGCGCUAGUAUCAGCUUCUU ....((((((((((((....)))................................((((((....))))))................))))))))).(((......)))..... (-19.46 = -19.34 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:24 2006