Locus 4333

Sequence ID 2L_DroMel_CAF1
Location 12,410,388 – 12,410,487
Length 99
Max. P 0.697734
window6827

overview

Window 7

Location 12,410,388 – 12,410,487
Length 99
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 82.75
Mean single sequence MFE -33.55
Consensus MFE -24.67
Energy contribution -26.32
Covariance contribution 1.64
Combinations/Pair 1.24
Mean z-score -1.85
Structure conservation index 0.74
SVM decision value 0.34
SVM RNA-class probability 0.697734
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12410388 99 - 22407834
GCCCCGAGAUGAGUCGAGCAGAGUCAACUGGGCUUGACUUAUUUUUAAUGUCGUUAUUUUGGCUCAAAGUGUC-CGAUGCGCCGGGGUAUGCAGGAAUCG
(((((((((((((((((((..((....))..))))))))))))).....((((.(((((((...)))))))..-))))....))))))............ ( -35.30)
>DroSec_CAF1 234153 99 - 1
GCCCCGAGAUGAGUCGAGCAGAGUCAACUGGGCUUGACUUAUUUUUAACGUCGUUAUUUUGGCUCAAAGUGUC-CAAUGCGGCGGGGUAUGCAGGAAUCG
(((((((((((((((((((..((....))..))))))))))))))....(((((....(((((.......).)-))).))))))))))............ ( -39.00)
>DroSim_CAF1 241754 99 - 1
GCCCCGAGAUGAGUCGAGCAGAGUCAACUGGGCUUGACUUAUUUUUAACGUCGUUAUUUUGGCUCAAAGUGUC-CAAUGCGGCGGGGUAUGCAGGAAUCG
(((((((((((((((((((..((....))..))))))))))))))....(((((....(((((.......).)-))).))))))))))............ ( -39.00)
>DroEre_CAF1 232963 99 - 1
GCCCCGAGAUGAGUCGAGGAGAGUCAACUGGGCUUGACUUAUUUUUAACGUCGUUAUUUUGGUUGAAGGUGCC-UGAUGCGGCAGGGUAUGCAGGAUUCG
((((((((((((((((((...((....))...)))))))))))))....(((((.(((..(((.......)))-.)))))))).)))...))........ ( -28.70)
>DroYak_CAF1 243134 99 - 1
GCCCCGAGACGAGUCGAGUAGAGUCAACUGGGCUUGACUUAUUUGUAUCGUCGUUAUUUUGGCCCAAAGUGUC-UGGUGCGGCAGGGUAUGCAGGAUACU
(((((.(((((((((((((..((....))..))))))))).((((....((((......)))).))))..)))-).).).)))..(((((.....))))) ( -29.30)
>DroAna_CAF1 221322 95 - 1
GCCCUGAGAUGCGACGUGGAAAGUUAAGUCAGCUUGACUUAUUUUUAACGUCGUUAG-----GGGUAGUUGCCGUGAUAUGAGAGGGUGUAUAGGACUCU
(((((.....(((((((.((((((.(((((.....))))))))))).)))))))..)-----))))((...((...((((......))))...))...)) ( -30.00)
>consensus
GCCCCGAGAUGAGUCGAGCAGAGUCAACUGGGCUUGACUUAUUUUUAACGUCGUUAUUUUGGCUCAAAGUGUC_CGAUGCGGCAGGGUAUGCAGGAAUCG
(((((((((((((((((((..((....))..))))))))))))))....(((((......(((.......))).....))))))))))............ (-24.67 = -26.32 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:16 2006