| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,390,951 – 12,391,045 |
| Length | 94 |
| Max. P | 0.590269 |
| Location | 12,390,951 – 12,391,045 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 80.94 |
| Mean single sequence MFE | -26.63 |
| Consensus MFE | -15.11 |
| Energy contribution | -16.25 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.590269 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12390951 94 + 22407834 ----CCUGGCCAGUCUCGACGGGAACGUGGACAUUUUGCGCAUAACAAAUCAAGCUCGA--GAGCUUGAACAAACAGCAAAAGCCACCGGCGGGGGGGAA ----(((.(((.((..(....)..))((((...((((((..........(((((((...--.))))))).......)))))).)))).))).)))..... ( -33.13) >DroPse_CAF1 297237 95 + 1 UCAGUCUGGCCAGUCUCGACGUGAACGUGGACAUUUUGCGCAUAACAAAUCAAGCACAAGAGAACUUGAACAAACAGCAAAA----CCGACGAAGAA-AA ...(((.((...((((..(((....))))))).((((((((............)).((((....))))........))))))----)))))......-.. ( -20.10) >DroEre_CAF1 213497 93 + 1 ----CCUGGCCAGUCUCGACGGGAACGUGGACAUUUUGCGCAUAACAAAUCAAGCUCGA--GAGCUUGAACAAACAGCAAAAGCCAGCGGCGAGGGG-AA ----(((.(((.((((..(((....))))))).((((((..........(((((((...--.))))))).......))))))......))).)))..-.. ( -32.73) >DroYak_CAF1 223309 93 + 1 ----CCUGGCCAGUCUCGACGGCAACGUGGACAUUUUGCGCAUAACAAAUCAAGCUCGA--GAGCUUGAACAAACAGCAAAAGCCACCGGCGAGGGG-AA ----(((.(((.((((..(((....))))))).((((((..........(((((((...--.))))))).......))))))......))).)))..-.. ( -33.73) >DroAna_CAF1 201897 79 + 1 --CUUCUGCCCUGUCUCGACAUGGACGUGGACAUUUUGCGCAUAACAAAUCAAGCUCGG--GCGCUUGAACAAACAG----------------GGGA-CA --......((((((.........(.((..((...))..)))........((((((....--..))))))....))))----------------))..-.. ( -20.00) >DroPer_CAF1 299690 95 + 1 UCAGUCUGGCCAGUCUCGACGUGAACGUGGACAUUUUGCGCAUAACAAAUCAAGCACAAGAGAACUUGAACAAACAGCAAAA----CCGACGAAGAA-AA ...(((.((...((((..(((....))))))).((((((((............)).((((....))))........))))))----)))))......-.. ( -20.10) >consensus ____CCUGGCCAGUCUCGACGGGAACGUGGACAUUUUGCGCAUAACAAAUCAAGCUCGA__GAGCUUGAACAAACAGCAAAA____CCGGCGAGGGA_AA ....(((.....((((..(((....))))))).((((((..........((((((........)))))).......))))))...........))).... (-15.11 = -16.25 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:12 2006