Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,279,512 – 1,279,604 |
Length | 92 |
Max. P | 0.619508 |
Location | 1,279,512 – 1,279,604 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 75.96 |
Mean single sequence MFE | -28.96 |
Consensus MFE | -21.85 |
Energy contribution | -21.19 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.52 |
Mean z-score | -0.83 |
Structure conservation index | 0.75 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.619508 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1279512 92 - 22407834 GUCAGCGAGUC-----------CUUGCUCCU-----UAGUCCUGAAUCCCGAGUCCUGAGCCGCGGGUGUGCUUUAUAAAACAAAUAAGUUGGAGCGCCUCGGGCUCC ......(((((-----------(..((..((-----(((..((........))..)))))..))(((.((((((((..............))))))))))))))))). ( -29.94) >DroVir_CAF1 61713 79 - 1 GUGUCAAUGUG-----------GGUGUG---GAGUGUAC--G-------------UUGUGCCGCGGGUGUGCUUUAUAAAACAAAUAAGCGAAUGCGCUUCAGGCGUC ..(((..(((.-----------..((((---(((..(((--.-------------(((.....))))))..)))))))..)))...(((((....)))))..)))... ( -21.50) >DroSec_CAF1 38977 92 - 1 GUCAGCGAGUC-----------CUUGCUCCU-----UAGUCCUGAAUCCCGAGUCCUGAGCCGCGGGUGCGCUUUAUAAAACAAAUAAGUUGAAGCGCCUCGGGCUCC ......(((((-----------(..((..((-----(((..((........))..)))))..))(((.((((((((..............))))))))))))))))). ( -32.24) >DroSim_CAF1 40191 91 - 1 GUCAGCGAGUC-----------CUUGGUCCU-----UAGUCCUGAAUCCCGAGUCCUGAGCCGUGGGUGCGCUUUAUAAAACA-AUAAGUUGGAGCGCCUCGGGCUCC .......((..-----------(((((...(-----((....)))...)))))..))(((((.((((.((((((((.......-......))))))))))))))))). ( -30.22) >DroEre_CAF1 51390 92 - 1 GUCGGCGAGUC-----------CUUGCUCCU-----UAGUCCUGAAUCCCGUGUCCCGAGCCGCGGGUGCGCUUUAUAAAACAAAUAAGUUCGAGCGCCUCGGGCUCC ..(((.((.((-----------...(((...-----.)))...)).)))))......(((((.((((.((((((.....(((......))).))))))))))))))). ( -29.00) >DroYak_CAF1 40697 103 - 1 GUCAGUGAGUCCUGGCUCUCUCCUUGCUCCU-----UCAUCCUGAAUCCCGAGUCCUGAGCCGCGGGUGCGCUUUAUAAAACAAAUAAGUUGAAGCGCCUCGAGCUCC ......((((...(((((....((((....(-----((.....)))...))))....))))).((((.((((((((..............)))))))))))).)))). ( -30.84) >consensus GUCAGCGAGUC___________CUUGCUCCU_____UAGUCCUGAAUCCCGAGUCCUGAGCCGCGGGUGCGCUUUAUAAAACAAAUAAGUUGAAGCGCCUCGGGCUCC ...((((((.............)))))).............................(((((.((((.((((((((..............))))))))))))))))). (-21.85 = -21.19 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:10 2006