Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,388,506 – 12,388,607 |
Length | 101 |
Max. P | 0.686316 |
Location | 12,388,506 – 12,388,607 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 90.77 |
Mean single sequence MFE | -34.62 |
Consensus MFE | -28.28 |
Energy contribution | -28.35 |
Covariance contribution | 0.07 |
Combinations/Pair | 1.04 |
Mean z-score | -2.15 |
Structure conservation index | 0.82 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.686316 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12388506 101 - 22407834 GAGCAGCAGUGUCGCGAUGGCU---------GGUGAACGGGGUGGGGCAAAACAAUGCGCCGGCCAUAAAAGUCGCGCCAGAGCCGCAAGAAUUAUAGCCAAUGUAAUUA ..((.((..((.((((((((((---------((((....(..(......)..)....)))))))))......))))).))..)).))...(((((((.....))))))). ( -33.10) >DroSec_CAF1 212453 101 - 1 GAGCAGCAGUGUCGCGAUGGCU---------GGUGAACGGGGUGGGGCAAAACAAUGCGCCGGCCAUAAAAGUCGCGCCAGAGCCGCAAGAAUUAUAGCCAAUGUAAUUA ..((.((..((.((((((((((---------((((....(..(......)..)....)))))))))......))))).))..)).))...(((((((.....))))))). ( -33.10) >DroSim_CAF1 220040 101 - 1 GAGCAGCAGUGUCGCGAUGGCU---------GGUGAACGGGGUGGGGCAAAACAAUGCGCCGGCCAUAAAAGUCGCGCCAGAGCCGCAAGAAUUAUAGCCAAUGUAAUUA ..((.((..((.((((((((((---------((((....(..(......)..)....)))))))))......))))).))..)).))...(((((((.....))))))). ( -33.10) >DroEre_CAF1 211153 110 - 1 GAGCAGCAGUGUCGCGAUGCCUGGAUGGGGUGGAGAACGGGGUGGGGCAAAACAAUGCGCCGGCCAUAAAAGUCGCGCCAGAGCCGCAAGAAUUAUAGCCAAUGUAAUUA ..((.((..((.((((((((((.....))))........((.(((.(((......))).))).))......)))))).))..)).))...(((((((.....))))))). ( -35.10) >DroYak_CAF1 220920 101 - 1 GAGCAGCAGUGUCGCGAUGGCU---------GGAGAGCGGGGUGGGGCAAAACAAUGCGCCGGCCAUAAAAGUCGCGCCAGAGCCGCAAGAAUUAUAGCCAAUGUAAUUA ..((.((..((.((((((((((---------((...(((..((........))..))).)))))))......))))).))..)).))...(((((((.....))))))). ( -34.70) >DroAna_CAF1 199744 88 - 1 GAGCGGCAGCGUCGCGAUG---------------------GGCGGGGCAAAACAAUGC-CCGGCCAUAAAAGUCGCGCCAGAGCCGCAAGAAUUAUAGUCAAUGUAAUUA ..(((((...(.((((((.---------------------(((.(((((......)))-)).)))......)))))).)...)))))...(((((((.....))))))). ( -38.60) >consensus GAGCAGCAGUGUCGCGAUGGCU_________GGUGAACGGGGUGGGGCAAAACAAUGCGCCGGCCAUAAAAGUCGCGCCAGAGCCGCAAGAAUUAUAGCCAAUGUAAUUA ..((.((..((.((((((..............(....)..(((.(((((......))).)).)))......)))))).))..)).))...(((((((.....))))))). (-28.28 = -28.35 + 0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:09 2006