| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,384,924 – 12,385,017 |
| Length | 93 |
| Max. P | 0.651703 |
| Location | 12,384,924 – 12,385,017 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 69.15 |
| Mean single sequence MFE | -19.28 |
| Consensus MFE | -3.22 |
| Energy contribution | -4.34 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.17 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.651703 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12384924 93 - 22407834 UCCGUAGAGUAUUCACUAAUAAUGGCUACAAU---U---AGAGUCAUUAUUGCUAAAGGUGUAAAAUACUUUAUAUAA--UAAGAGCUGAUAUAUCGGCGA ...((((((((((((((((((((((((.....---.---..))))))))))......))))...))))))))))....--.....(((((....))))).. ( -24.40) >DroSec_CAF1 208903 95 - 1 UUCUUGAACUAU------AUAAUGGCUACAGUAAUUUCUAGAGUCAUUAUUCCUAAAGGUGUAAAAUAUUUUAUAUUACAUUAGAGCUAAUAUAUGGUCGA ...((((.((((------(((.(((((...(((((...((((((..((((.((....)).))))...)))))).))))).....))))).))))))))))) ( -20.50) >DroSim_CAF1 216477 98 - 1 UUCUUGGAAUAUCCACUAAUAAUGGCUACAAUGAUU---ACAGUCCUUAUGGCUAAAGGUGUUAAAUACUUUUUAUUACAUUAGAGCUAAUAUAUCGUCGA ....(((.....)))...(((.(((((..((((...---..((.((....))))((((((((...)))))))).....))))..))))).)))........ ( -15.90) >DroEre_CAF1 207590 87 - 1 UUCUUAGAGUGGUCACUAGUAAAAGCUACAAUAAUUUCUAGCGUAAUGGCUGCUUAUGGUGUAAAA--------------UAACAGCUGAUAUAUGGCCAA .........((((((.........((((.((....)).))))(((.((((((.((((........)--------------))))))))).))).)))))). ( -19.50) >DroYak_CAF1 217208 101 - 1 UUCUUAGAUUAUCCACUAAUAACAGCUUCAAAAAUUACUAGAGUAAUUACUGCCAAAGGUGUAAAAUACCUUAUACAAAAUAAGAGCUGAUUUUACGACAA ......................((((((....((((((....)))))).......(((((((...)))))))...........))))))............ ( -16.10) >consensus UUCUUAGAGUAUCCACUAAUAAUGGCUACAAUAAUU_CUAGAGUCAUUAUUGCUAAAGGUGUAAAAUACUUUAUAUAA_AUAAGAGCUGAUAUAUCGUCGA ..................(((.(((((...............(((.....)))..(((((((...)))))))............))))).)))........ ( -3.22 = -4.34 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:06 2006