Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,368,943 – 12,369,044 |
Length | 101 |
Max. P | 0.649061 |
Location | 12,368,943 – 12,369,044 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 81.74 |
Mean single sequence MFE | -21.08 |
Consensus MFE | -14.44 |
Energy contribution | -14.95 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.28 |
Mean z-score | -1.65 |
Structure conservation index | 0.69 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.649061 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12368943 101 + 22407834 AUUGUAUCUGUAUCCGGAUCUCAGCCUGUAAUUAUGGGGCGUAUUGUUUUAUAAUUCCACUGCCCUAACGCCCCCUA-UUUCAGAAUUUCCUUGUGGCAUAU ...(((((..((...(((.......(((.(((...(((((((...((..............))....)))))))..)-)).)))....))).))..).)))) ( -18.84) >DroSec_CAF1 192994 93 + 1 --------UGUAUCCGCAUCUCUGCCUGUAAUUAUGGGGCGUAUUGUUUUAUAAUUCCACUGCCCCAACGCCCCCUA-UUUCAGCAUUUCCUCGUGGCAUAU --------.((((((((.....(((.((.(((...(((((((...((..............))....)))))))..)-)).))))).......)))).)))) ( -20.34) >DroSim_CAF1 198240 93 + 1 --------UGUAUCCGCAUCUCUGCCUGUAAUUAUGGGGCGUAUUGUUUUAUAAUUCCACUGCCCCAACGCCCCCUA-UUUCAGCAUUUCCUCGUGGCAUAU --------.((((((((.....(((.((.(((...(((((((...((..............))....)))))))..)-)).))))).......)))).)))) ( -20.34) >DroEre_CAF1 191722 93 + 1 --------UGUAUCCGCAUCGCUGUCUGUAAUUUGGGGGCGUAUGGUUUUAUAAUUCCUCUGUCCCAACGCCCCUUU-UUUCAACAUUUGCUGGUGGCAUAU --------.((((((((...(((((.((......((((((((.(((..(............)..)))))))))))..-...)))))...))..)))).)))) ( -25.70) >DroYak_CAF1 201052 94 + 1 --------UGUAUCCACAUCUCUGUCUGUAAUUAGGGGGCGUAUUGUUUUAUAAUUUCACUGCCCCAACGCCCCUUUUUUUCACCAUUUUCUCGUGGCACAU --------(((..((((.........((.((..(((((((((...((..............))....)))))))))..)).))..........)))).))). ( -19.35) >DroAna_CAF1 180531 86 + 1 --------UGUAUCUGUAUCUCUGUCUGUAAUUAGGGGGCGUAUUGUUUUAUAAUACCACCCCUCGAGCCCCCCUC-------GCACUU-GUUGCGGCAUAU --------..............((.(((((((.((((((.(((((((...)))))))..)))).((((.....)))-------)..)).-)))))))))... ( -21.90) >consensus ________UGUAUCCGCAUCUCUGCCUGUAAUUAGGGGGCGUAUUGUUUUAUAAUUCCACUGCCCCAACGCCCCCUA_UUUCAGCAUUUCCUCGUGGCAUAU .........((((((((........(((.......(((((((.........................))))))).......))).........)))).)))) (-14.44 = -14.95 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:59 2006