Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,353,470 – 12,353,566 |
Length | 96 |
Max. P | 0.554486 |
Location | 12,353,470 – 12,353,566 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 82.52 |
Mean single sequence MFE | -29.55 |
Consensus MFE | -14.66 |
Energy contribution | -15.17 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.19 |
Mean z-score | -2.80 |
Structure conservation index | 0.50 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554486 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12353470 96 + 22407834 GGAUGAGGAGCGUAU--AUUGGGUGGCAGAGUGGGCGGAAGGUCGAGGCUG----CCAUCAAGUAGCUAAUGGUAAUUGCCAUUGCAUUAACGUUAUUAAUU ...(((..(((((.(--(((.((((((((..(((.(....).)))...)))----))))).))))((.((((((....))))))))....))))).)))... ( -34.40) >DroSec_CAF1 177457 98 + 1 GGAUGAGGAGCGUAUAAAUUGGGUGGCAGAGUGGGCGGAAGGCCGAGGCUG----CCAUCAAGUAGCUAAUGGUAAUUGCCAUUGCAUUAACGUUAUUAAUU ...(((..(((((........((((((((..(((.(....).)))...)))----))))).....((.((((((....))))))))....))))).)))... ( -36.20) >DroSim_CAF1 182437 98 + 1 GGAUGAGGAGCGUAUAAAUUGGGUGGCAGAGUGGGCGGAAGGUCGAGGCUG----CCAUCAAGUAGCUAAUGGUAAUUGCCAUUGCAUUAACGUUAUUAAUU ...(((..(((((........((((((((..(((.(....).)))...)))----))))).....((.((((((....))))))))....))))).)))... ( -33.30) >DroEre_CAF1 176318 92 + 1 ----GCGGGGCUUAU--ACUGGGUGGCGGAGUGGGCGGAAGGUCGAGGCUG----CCAUCAAGUAGCUAAUGAUAAUUGCCAUUGCAUUAAUGUUAUUAAUU ----(((((((...(--(((.((((((((..(((.(....).)))...)))----))))).))))...(((....)))))).))))................ ( -29.80) >DroYak_CAF1 183704 92 + 1 ----GUGGUGCUUAU--AUUGGGGGGCAGAGUGGGCGGAAGGUCGAGGCUG----CCAUCAAGUAGCUAAUGAUAAUUGCCAUUGCAUUAAUAUUAUUAAUU ----.....(((...--.((((..(((((..(((.(....).)))...)))----)).))))..)))((((((((..(((....)))....))))))))... ( -26.40) >DroPer_CAF1 259774 84 + 1 GG--GAGGA-----------GGGUGG-----AUGGUGGAAGGUCGCAGCAGCAGCCCAUCGAGUGACUAAUGAUAAUUGGCAUUGCAUUAAGGUUAUUAAUU ..--...((-----------((((..-----.((.(((.....).)).))...)))).)).(((((((((((.((((....))))))))..))))))).... ( -17.20) >consensus GG__GAGGAGCGUAU__AUUGGGUGGCAGAGUGGGCGGAAGGUCGAGGCUG____CCAUCAAGUAGCUAAUGAUAAUUGCCAUUGCAUUAACGUUAUUAAUU .....................((((((((..(((.(....).)))...)))....))))).(((((((((((.((((....)))))))))..)))))).... (-14.66 = -15.17 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:54 2006