Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,328,301 – 12,328,394 |
Length | 93 |
Max. P | 0.754493 |
Location | 12,328,301 – 12,328,394 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 88.20 |
Mean single sequence MFE | -27.30 |
Consensus MFE | -21.10 |
Energy contribution | -20.72 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.17 |
Mean z-score | -2.92 |
Structure conservation index | 0.77 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.754493 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12328301 93 + 22407834 AAUCAGAUUGUGGCCAAA----AACUUCAAAACGAAGUUUAGGCAGCUAAUUAAUUAAGUUCCU---GCACUUGGGCGUUUUCC-GGCCACCAAUCCAAAC .....((((((((((..(----((((((.....)))))))..((((..((((.....)))).))---))....(((.....)))-))))).)))))..... ( -26.00) >DroSec_CAF1 151312 93 + 1 AAUCAGAUUGUGGCCAAA----AACUUCAAAACGAAGUUUAGGCAGCUAAUUAAUUAAGUUCCU---GCACUUGGGCGUUUUCC-GGCCACCAAUCCAAAC .....((((((((((..(----((((((.....)))))))..((((..((((.....)))).))---))....(((.....)))-))))).)))))..... ( -26.00) >DroSim_CAF1 155467 93 + 1 AAUCAGAUUGUGGCCAAA----AACUUCAAAACGAAGUUUAGGCAGCUAAUUAAUUAAGUUCCU---GCACUUGGGCGUUUUCC-GGCCACCAAUCCAAAC .....((((((((((..(----((((((.....)))))))..((((..((((.....)))).))---))....(((.....)))-))))).)))))..... ( -26.00) >DroEre_CAF1 149874 92 + 1 AAUCAGAUUGUGGCCAAA----AACUUCACAACGAAGUUUAGGCAGCUAAUUAAUUAAGUUCCU---GCACUUGGGGGUUUUCC-GGCCAUCGGCCCG-AC .......(((.((((..(----((((((.....))))))).(((............(((..(((---......)))..)))...-.)))...))))))-). ( -24.69) >DroYak_CAF1 156497 92 + 1 AAUCAGAUUGUGGCCAAA----AACUUCACAACGAAGUUUAGGCAGCUAAUUAAUUAAGUUCCU---GCACUUGGGGGCUUUCC-GGCCACCAAUCCG-AC ..((.((((((((((..(----((((((.....)))))))................((((((((---......))))))))...-))))).))))).)-). ( -30.50) >DroAna_CAF1 139538 99 + 1 AAUCAGAUUGUGGCUGAAAAGAAACUUCGCAACGAAGUUUAGGCAGCUAAUUAAUUAAGUUCCUCUCGCCGUCCGCCGUAAUCGAGGCCA-CAAUUUG-AC ..((((((((((((.......((((((((...))))))))(((.((((.........)))))))((((.((.....))....))))))))-)))))))-). ( -30.60) >consensus AAUCAGAUUGUGGCCAAA____AACUUCAAAACGAAGUUUAGGCAGCUAAUUAAUUAAGUUCCU___GCACUUGGGCGUUUUCC_GGCCACCAAUCCA_AC .....((((((((((.......((((((.....)))))).(((.((((.........))))))).....................))))).)))))..... (-21.10 = -20.72 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:48 2006