| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,324,916 – 12,325,009 |
| Length | 93 |
| Max. P | 0.817132 |
| Location | 12,324,916 – 12,325,009 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.36 |
| Mean single sequence MFE | -21.73 |
| Consensus MFE | -12.19 |
| Energy contribution | -13.22 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.817132 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12324916 93 + 22407834 -----GAGGCAAACAAAUUAAAAUACAUUUAGGCAGCUGUGACCAGC--------------------CCGCCCACAAUUUACGCAGUGCAAACUUAUAUUUUAUGACUUUGAAUUGCG-- -----..........................(((.((((....))))--------------------..))).........((((((.((((.(((((...))))).)))).))))))-- ( -19.00) >DroVir_CAF1 185822 97 + 1 AACAACAACAAAGCAAAUUAAAAAAUAUUUAGGCAGCUGUGGCGAGC----------------------ACUCGAAAUUUACGCAGUGCAAACUUAUAUUUUAUGAUUUUGAUU-GCGAG ............((((((((.(((((((....(((.(((((.(((..----------------------..))).......))))))))......))))))).)))).....))-))... ( -18.10) >DroPse_CAF1 220536 85 + 1 -----CAGGCAAACAAAUUAAAAUACAUUUAGGCAGCUGCG----------------------------GCCCACACUUUACGCAGUGCAAACUUAUAUUUUAUGACUUUGAUUUGCU-- -----..((((((((((.(((((((.......(((.(((((----------------------------............)))))))).......)))))))....)))).))))))-- ( -21.04) >DroGri_CAF1 189434 97 + 1 AGCAACAACAAAGCAAAUUAAAAUAUAUUUAGGCAGCUGUGGCGAGC----------------------ACUCGAAAUUUACGCAGUGCAAACUUAUAUUUUAUGAUUUUGAUU-GCAAA .((((...(((((((...(((((((((.....(((.(((((.(((..----------------------..))).......)))))))).....))))))))))).))))).))-))... ( -22.70) >DroAna_CAF1 136230 116 + 1 --GAGGAGGCAAACAAAUUAAAAUACAUUUAGGCAGCUGUGGCCAGCCACGCCCAUGCUCGUGCCUCCCGCCCACAAUUUACGCAGUGCAAACUUAUAUUUUAUGACUUUGAUUUGCG-- --(.(((((((.......((((.....))))((((((.((((....))))))...))))..))))))))............(((((..((((.(((((...))))).))))..)))))-- ( -30.40) >DroPer_CAF1 225952 85 + 1 -----CAGGCAAACAAAUUAAAAUACAUUUAGGCAGCUGUG----------------------------GCCCACACUUUACGCAGUGCAAACUUAUAUUUUAUGACUUUGAUUUGCU-- -----..((((((((((.(((((((.......(((.(((((----------------------------............)))))))).......)))))))....)))).))))))-- ( -19.14) >consensus _____CAGGCAAACAAAUUAAAAUACAUUUAGGCAGCUGUGGC_AGC______________________GCCCACAAUUUACGCAGUGCAAACUUAUAUUUUAUGACUUUGAUUUGCG__ ........(((((((((.(((((((.......(((.(((((........................................)))))))).......)))))))....)))).)))))... (-12.19 = -13.22 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:47 2006