Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,270,262 – 1,270,353 |
Length | 91 |
Max. P | 0.616431 |
Location | 1,270,262 – 1,270,353 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 82.10 |
Mean single sequence MFE | -27.27 |
Consensus MFE | -18.71 |
Energy contribution | -19.85 |
Covariance contribution | 1.14 |
Combinations/Pair | 1.15 |
Mean z-score | -1.64 |
Structure conservation index | 0.69 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.616431 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1270262 91 - 22407834 GCCUUCGCAAGUUGCUUAUGUGUUGCAUACUUCAAGGGGCAGCC-U---GCUUUAGCUGCUUUUGCAUCAUCAAUCAAAGGCAGCCC-GUAUGUGU ......(((.(((((((...((..........))..))))))).-)---))....((((((((((.((.....))))))))))))..-........ ( -25.60) >DroPse_CAF1 43014 87 - 1 GCCUCUGGAAGUUGCUUAUGUGUUGCAUACUUCAAGGAGCCAGA-G---G-CUUAGCUGCUUUCGCAUCAUCAAUCAAAGGCAGCCC-AUAGG--- ((((((((..((.((......)).))...(((....))))))))-)---)-)...((((((((..............))))))))..-.....--- ( -27.74) >DroEre_CAF1 42403 87 - 1 GCCUUUGCAAG---CGUGUGUGUUGCAUACUUCGAGGGGCAGCC-G---GC-UUAGCUGCUUUUGCAUCAUCAAUCAAAGGCGGCAA-GUAUGUGU .((((((.(((---..(((.....)))..)))))))))(((...-.---((-((.((((((((((.((.....))))))))))))))-)).))).. ( -29.70) >DroYak_CAF1 31080 92 - 1 GCCUUUGCAAGUUGCUUAUGUGUUGCAUACUUCAAGGGGCAGCCCG---GCUUUAGCUGCUUUUGCAUCAUCAAUCAAAGGCAGCUC-GUAUGUGU (((.(((.(((((((.........))).)))))))(((....))))---))...(((((((((((.((.....))))))))))))).-........ ( -28.40) >DroAna_CAF1 54025 90 - 1 GCCUUUGCAGCAGGCUUAUGUGUUGCAUACUUCAAGGAGUCGAC-UUUAGCCUUAGCUGCUUUUGCAUCAUCAAUCAAAGGCAGCCCCAUA----- ((((((((((((((((.....((((...((((....))))))))-...)))))..)))))..(((......)))..)))))).........----- ( -26.70) >DroPer_CAF1 43508 87 - 1 GCCUUUGGAAGUUGCUUAUGUGUUGCAUACUUCAAGGAGCCAGA-G---G-CUUAGCUGCUUUCGCAUCAUCAAUCAAAGGCAGCCC-AUAGG--- (((((((((((((((.........))).)))))...((((..((-(---(-(......))))).)).))......))))))).....-.....--- ( -25.50) >consensus GCCUUUGCAAGUUGCUUAUGUGUUGCAUACUUCAAGGAGCAGCC_G___GCCUUAGCUGCUUUUGCAUCAUCAAUCAAAGGCAGCCC_AUAUG___ (((((((.(((((((.........))).))))))))).))...............((((((((((.((.....))))))))))))........... (-18.71 = -19.85 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:07 2006