Locus 4307

Sequence ID 2L_DroMel_CAF1
Location 12,308,602 – 12,308,700
Length 98
Max. P 0.566580
window6790

overview

Window 0

Location 12,308,602 – 12,308,700
Length 98
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 80.45
Mean single sequence MFE -18.43
Consensus MFE -11.76
Energy contribution -13.85
Covariance contribution 2.09
Combinations/Pair 1.28
Mean z-score -1.48
Structure conservation index 0.64
SVM decision value 0.07
SVM RNA-class probability 0.566580
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12308602 98 - 22407834
UCUAUAAAUUCAGUUAGCUGUCAACUGCAAAAUGUUUUCCACUCAUUUUGGUAACCAGAAAUGUGUAACUUCUUGGAAUCCGCAAAGGAUUCCCACCC------
..........(((((.......)))))(((((((.........)))))))((.((((....)).)).)).....(((((((.....))))))).....------ ( -20.60)
>DroSec_CAF1 131133 97 - 1
UCUAUAAAUUCAGUUAGCUGUCAACUGCAAAAUGUUUUCCACACAUUUUGGUAACCAGAAAUGUGUAACUUCUUGGAAUCCGCAAAGGAUUCCCGCC-------
..........(((....)))......((............(((((((((((...)))).)))))))........(((((((.....))))))).)).------- ( -22.80)
>DroSim_CAF1 134835 97 - 1
UCUAUAAAUUCCGUUAGCUGUCAACUGCAAAAUGUUUUCCACACAUUUUGGUAACCAGAAAUGUGUAACUUCUUGGAAUCCGCAAAGGAUUCCCGCC-------
............(((.((........))............(((((((((((...)))).)))))))))).....(((((((.....)))))))....------- ( -21.80)
>DroEre_CAF1 129046 86 - 1
UCUAUAAAUUCAGUUAGCUGUCAACUGCAAAAUGUUUUCCACACAUUUUGGUAACCAGAAAUGUGUAACUUCUCGGAAUCCUC------------------CAC
...........((((.((........))............(((((((((((...)))).)))))))))))....(((....))------------------).. ( -14.10)
>DroYak_CAF1 135610 104 - 1
UCUAUAAAUUCAGUUAGCUGUCAACUGCAAAAUGUUUUCCACACAUUUUGGUAACCAGAAAUGUGUAACUUCUUGGAAUCCGCAAAGGAUUCCCCCCCGUUCGC
...........((((.((........))............(((((((((((...)))).)))))))))))....(((((((.....)))))))........... ( -22.30)
>DroAna_CAF1 119746 85 - 1
---CUAAAUUCUCUUAGCUGUCAACCGUAAAACAUUUCUCGCACAUUUCGGUAACCAGG-------AACUUCUUUGAAUCCACCAAGGACCUAUC---------
---..............(((...((((.....................))))...))).-------....((((((.......))))))......--------- (  -9.00)
>consensus
UCUAUAAAUUCAGUUAGCUGUCAACUGCAAAAUGUUUUCCACACAUUUUGGUAACCAGAAAUGUGUAACUUCUUGGAAUCCGCAAAGGAUUCCCCCC_______
................((........))............(((((((((........)))))))))........(((((((.....)))))))........... (-11.76 = -13.85 +   2.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:41 2006