Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,308,297 – 12,308,391 |
Length | 94 |
Max. P | 0.545961 |
Location | 12,308,297 – 12,308,391 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 76.20 |
Mean single sequence MFE | -24.26 |
Consensus MFE | -6.07 |
Energy contribution | -6.67 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.17 |
Mean z-score | -1.67 |
Structure conservation index | 0.25 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545961 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12308297 94 + 22407834 CGCAAAAAAUUCUGCUGCAAACUGCGAAAGAGGGAGAGGGAAUGG--------GAAUGGG-AAUGUGCAUCUGCAACUAACAUCUCCCUUCAACUCCUUCAAC .(((........)))(((.....)))...(((((((...(((.((--------(((((..-....(((....))).....))).)))))))..)))))))... ( -27.90) >DroSec_CAF1 130844 86 + 1 CGCAAAAAAUGCUGCUGCGAACUGCGAAAG--GGAGAGGGA--------------AUGUG-AAUGUGCAUCUGCAACUAACAACUCCCUUCAACUCCUCCAAC ((((.....(((....)))...))))...(--(((((((((--------------.(((.-....(((....)))....)))..)))))....)))))..... ( -22.50) >DroSim_CAF1 134547 86 + 1 CGCAAAAAAUGCUGCUGCGAACUGCGAAAG--GGAGAGGGA--------------AUGGG-AAUGUGCAUCUGCAACUAACAUCUCCCUUCAACUCCUCCAAC ((((.....(((....)))...))))...(--(..(((.((--------------(.(((-(((((((....)).....)))).)))))))..)))..))... ( -23.20) >DroEre_CAF1 128746 94 + 1 GGCAAAAAAUGCUGCUGCAAACUGCGCAAG--GGAGGGGGAAUGGGGAAAGGGGAACGGGGAAUGUGCAUCUGCAACUAACAUCUCCCUUCAGC-------AA .........((((((.((.....))))...--(((((((((.(((....(((...(((.....)))...)))....)))...))))))))))))-------). ( -26.10) >DroYak_CAF1 135312 80 + 1 GGCAAAAAAUGCUGCUUCAAACUGCG-AAG--AGAGG------------AGAGGAGCAGGGA-GGUGCAUCUGCAACUAACAUCUCCCUUCAAC-------AA ((((.....))))(((((...((.(.-...--...).------------)).)))))(((((-((((.............))))))))).....-------.. ( -21.62) >consensus CGCAAAAAAUGCUGCUGCAAACUGCGAAAG__GGAGAGGGA____________GAAUGGG_AAUGUGCAUCUGCAACUAACAUCUCCCUUCAACUCCU_CAAC .(((.....(((....)))...)))........((.(((((................((......(((....))).......)))))))))............ ( -6.07 = -6.67 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:40 2006