Locus 43

Sequence ID 2L_DroMel_CAF1
Location 184,490 – 184,581
Length 91
Max. P 0.993793
window62

overview

Window 2

Location 184,490 – 184,581
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 98.24
Mean single sequence MFE -32.16
Consensus MFE -30.14
Energy contribution -30.02
Covariance contribution -0.12
Combinations/Pair 1.08
Mean z-score -2.00
Structure conservation index 0.94
SVM decision value 2.43
SVM RNA-class probability 0.993793
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 184490 91 - 22407834
CUCCGCUUCCCGUUGCUCCUGCCCCCUUAAGUAGCUUAUUGAGUUUGCUGCUGUGCAGAAGCAUAUUUCGUGAGGUGGCGGUGUUCAGUAA
(.(((((((.((.((((.((((.......((((((...........))))))..)))).)))).....)).))))))).)........... ( -28.30)
>DroSec_CAF1 730 91 - 1
CUCCGCUUCCCGCUGCUCCUGCCCCCUUAAGUAGCUUAUUGAGUUUGCUGCUGUGCAGAAGCAUAUUUCGUGAGGUGGCGGUGUUCAGUGA
..........(((((..((((((.(((((((((((...........))))))((((....))))......))))).))))).)..))))). ( -32.20)
>DroSim_CAF1 730 91 - 1
CUCCGCUUCCCGCUGCUCCUGCCCCCUUAAGUAGCUUAUUGAGUUUGCUGCUGUGCAGAAGCAUAUUUCGUGAGGUGGCGGUGUUCAGUGA
..........(((((..((((((.(((((((((((...........))))))((((....))))......))))).))))).)..))))). ( -32.20)
>DroEre_CAF1 745 91 - 1
CUCCGCUUCCCGCUGCUCCUGCCCCCUUAAGUAGCUUAUUGAGUUUGCUGCUGUGCAGAAGCAUAUUUCGUGAGGUGGCGGGGUUCAGUGA
..........(((((.(((((((.(((((((((((...........))))))((((....))))......))))).)))))))..))))). ( -34.80)
>DroYak_CAF1 736 91 - 1
CUCCGCUUCCCGCUGCUUCUGCCCCCUUAAGUAGCUUAUUGAGUUUGCUGCUGUGCAGAAGCAUAUUUCGUGAGGUGGCGGUGUUCAGUGA
(.(((((.((((((((((((((.......((((((...........))))))..)))))))))......))).)).))))).)........ ( -33.30)
>consensus
CUCCGCUUCCCGCUGCUCCUGCCCCCUUAAGUAGCUUAUUGAGUUUGCUGCUGUGCAGAAGCAUAUUUCGUGAGGUGGCGGUGUUCAGUGA
..........(((((..((((((.(((((((((((...........))))))((((....))))......))))).))))).)..))))). (-30.14 = -30.02 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:00 2006