Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,297,830 – 12,297,922 |
Length | 92 |
Max. P | 0.931590 |
Location | 12,297,830 – 12,297,922 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 75.63 |
Mean single sequence MFE | -22.54 |
Consensus MFE | -11.74 |
Energy contribution | -12.10 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.19 |
Mean z-score | -2.14 |
Structure conservation index | 0.52 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.931590 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12297830 92 + 22407834 AAC-----AUUC-UCAGC-CAAUUGCACAAUUGAUAACAAUUAAUUUGUGCAG-U-GCGCAUU-----UU-GCGU--GUUUGUGCAAAUAAAUUAGUUGCACAUUGGCC- ...-----....-...((-((((((((((((((((....))))).))))))))-)-((((...-----..-))))--...(((((((.........))))))).)))).- ( -29.00) >DroVir_CAF1 146046 95 + 1 AAU-----CGUC-CCAGC-CAAUUGCAUAUUUGAUAACAAUUAAUUUGGCCAG-UUGCGCGCUCGAGU-------UGCUUUGUGCAAAUAAAUUAGCUGACAAUUUUGUG ...-----....-.((((-.((((...((((((...((((.((((((((((..-....).)).)))))-------))..)))).)))))))))).))))........... ( -19.20) >DroPse_CAF1 183230 92 + 1 AAC-----AUUC-UCAAC-CAAUUGCACAUUCGAUAACAAUUAAUUUGUGCAG-U-GCGCAUU-----UU-GCGU--GUUUGUGCAAAUAAAUUAGUAGGACCCCCCCC- ...-----....-....(-(.((((......)))).((((((.(((((..(((-.-.(((...-----..-))).--.).))..))))).)))).)).)).........- ( -18.10) >DroWil_CAF1 141380 101 + 1 -UCUUUCGAUUCGUUGGCUAAAUUGCCUAUUUGAUAACAAUUAAUUUGUGCAUUU-GCGCAUU-----UUGGCGU--GUUUGUGCAAAUAAAUUAGCUAACAAUUUAGAG -.((((.((((.(((((((((......((.(((....))).))(((((..((..(-((((...-----...))))--)..))..)))))...))))))))))))).)))) ( -28.80) >DroAna_CAF1 109258 93 + 1 AAC-----AUUC-UCAGC-CAAUUGCACAUUCGAUAACAAUUAAUUUGUGCAG-U-GCGCAUU-----UU-GCGU--GUUUGUGCAAAUAAAUUAGUUGGCCAUUUCUCU ...-----....-...((-((((((..............(((.(((((..(((-.-.(((...-----..-))).--.).))..))))).)))))))))))......... ( -22.03) >DroPer_CAF1 188770 88 + 1 AAC-----AUUC-UCAAC-CAAUUGCACAUUCGAUAACAAUUAAUUUGUGCAG-U-GCGCAUU-----UU-GCGU--GUUUGUGCAAAUAAAUUAGUAGGACCCC----- ...-----....-....(-(.((((......)))).((((((.(((((..(((-.-.(((...-----..-))).--.).))..))))).)))).)).)).....----- ( -18.10) >consensus AAC_____AUUC_UCAGC_CAAUUGCACAUUCGAUAACAAUUAAUUUGUGCAG_U_GCGCAUU_____UU_GCGU__GUUUGUGCAAAUAAAUUAGUUGGACAUUUCCC_ ..............((((..(((((............))))).(((((..(((...((((...........))))....)))..)))))......))))........... (-11.74 = -12.10 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:27 2006