Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,282,619 – 12,282,713 |
Length | 94 |
Max. P | 0.999708 |
Location | 12,282,619 – 12,282,713 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 95.64 |
Mean single sequence MFE | -19.58 |
Consensus MFE | -18.91 |
Energy contribution | -19.31 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.18 |
Structure conservation index | 0.97 |
SVM decision value | 3.92 |
SVM RNA-class probability | 0.999708 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12282619 94 - 22407834 GAAAUAUUUCGGCUUCGCAUAGUUUUAGUCACCCACAUGCACAAAACACCGCAUCUAUUCACCGCAUUGUGUGCGUAUAGCUUUCUAUUUCAAC ((((((....((((.(((((((((((.((((......)).)))))))...((...........))....))))))...))))...))))))... ( -19.00) >DroSec_CAF1 105525 94 - 1 GAAAUAUUUCGGCUUCGCAUACUUUUAGUCACCCACAUGCACAAAACACCGCAUCUAUUCACCGCAUUGUGUGCGUAUAGCUUUCUAUUUCAAC ((((((....((((.(((((((..............((((..........))))..............)))))))...))))...))))))... ( -20.29) >DroSim_CAF1 108589 94 - 1 GAAAUAUUUCGGCUUCGCAUACUUUUAGUCACCCACAUGCACAAAACACCGCAUCUAUUCACCGCAUUGUGUGCGUAUAGCUUUCUAUUUCAAC ((((((....((((.(((((((..............((((..........))))..............)))))))...))))...))))))... ( -20.29) >DroEre_CAF1 103804 94 - 1 GAAAUAUUUUGGCUUCGCAUACUUUUAGUCACCCACAUGCACAACACACCGCAUCUAUUCACCGCAUUGUGUGCGCAUAGCUUUCUAGUUCGAC (((.......((((.(((((((..............((((..........))))..............)))))))...))))......)))... ( -17.51) >DroYak_CAF1 109481 94 - 1 GAAAUAUUUUGGCUUCGCAUACUUUUAGUCGCCCACAUGCAGAAAAUACCGCAUCUAUUCACCGCAUUGUGUGCGUAUAGCUUUCUAUUUCUAC ((((((....((((.(((((((..............((((.(......).))))..............)))))))...))))...))))))... ( -20.79) >consensus GAAAUAUUUCGGCUUCGCAUACUUUUAGUCACCCACAUGCACAAAACACCGCAUCUAUUCACCGCAUUGUGUGCGUAUAGCUUUCUAUUUCAAC ((((((....((((.(((((((..............((((..........))))..............)))))))...))))...))))))... (-18.91 = -19.31 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:19 2006