| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,280,405 – 12,280,501 |
| Length | 96 |
| Max. P | 0.793195 |
| Location | 12,280,405 – 12,280,501 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 79.28 |
| Mean single sequence MFE | -18.19 |
| Consensus MFE | -9.52 |
| Energy contribution | -9.97 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.793195 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12280405 96 - 22407834 --UUUCUCCCAAUCCUGCUUGCUUUUUCGCAGCCAACACAUGGCUUUCAAAUAAUAAUAAUAUUCAAUGCUUAUUUGAUGGCGCUACAAAAGCAG---AAA --............((((((.......((((((((.....))))).((((((((..((........))..))))))))..)))......))))))---... ( -21.02) >DroPse_CAF1 157538 87 - 1 --CCUCACCCG--UCUUC-UGCCUC----UAGCCAACACAUGGCUUUCAAAUAAUAAUAAUAUUCAAUGCUUAUUUGAUGGCGCUAUAGAAAAAGG----- --......((.--(((..-((((..----.(((((.....))))).((((((((..((........))..)))))))).))))....)))....))----- ( -16.20) >DroEre_CAF1 101569 98 - 1 --UUUCUCCCAAUCCUGCUUGCCUUCGCGCAGCCAACACAUGGCUUUCAAAUAAUAAUAAUAUUCAAUGCUUAUUUGAUGGCGCUACAGAAAAAAAGAAA- --(((((..(((......))).....(((((((((.....))))).((((((((..((........))..))))))))..))))...)))))........- ( -17.30) >DroYak_CAF1 107169 96 - 1 UUUUUCUCCCCAUUCUGCUUGCUUUUUCGCAGCCAACACAUGGCUUUCAAAUAAUAAUAAUAUUCAAUGCUUAUUUGAUGGCGCUACAGAGAAAAA----- .(((((((........(((.((......))))).........(((.((((((((..((........))..)))))))).)))......))))))).----- ( -19.20) >DroAna_CAF1 94364 87 - 1 ---UUCUCUCCUCCCUU-----UUUUUC----CCAACACAUGGCUUUCAAAUAAUAAUAAUAUUCAAUGCUUAUUUGAUGGUGCCAUAGAAAAGGGAAA-- ---........((((((-----((((..----.......(((((..((((((((..((........))..))))))))....)))))))))))))))..-- ( -21.10) >DroPer_CAF1 164498 87 - 1 --CCUCACCCG--UCUUC-UGCUUC----UAGCCAACACAUGGCUUUCAAAUAAUAAUAAUAUUCAAUGCUUAUUUGAUGGCGCUAUAGAAAAAGG----- --......((.--(((..-.((.((----.(((((.....))))).((((((((..((........))..)))))))).)).))...)))....))----- ( -14.30) >consensus __UUUCUCCCAAUCCUGC_UGCUUUUUC_CAGCCAACACAUGGCUUUCAAAUAAUAAUAAUAUUCAAUGCUUAUUUGAUGGCGCUACAGAAAAAGG_____ ....................(((.......(((((.....))))).((((((((..((........))..)))))))).)))................... ( -9.52 = -9.97 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:18 2006