Locus 4290

Sequence ID 2L_DroMel_CAF1
Location 12,269,084 – 12,269,179
Length 95
Max. P 0.999758
window6763

overview

Window 3

Location 12,269,084 – 12,269,179
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 92.95
Mean single sequence MFE -17.92
Consensus MFE -15.84
Energy contribution -16.12
Covariance contribution 0.28
Combinations/Pair 1.09
Mean z-score -2.77
Structure conservation index 0.88
SVM decision value 4.02
SVM RNA-class probability 0.999758
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12269084 95 - 22407834
AAAACAACUGAACAACUCAACGAAGAAUGAACGAGCAAAACGUAGUGAACUUUGUUGCUAUCAAAGUUCAAACUGCAAUUCAUCUUCAUCAACAA
.....................(((((.((((...(((....((..(((((((((.......))))))))).)))))..)))))))))........ ( -19.20)
>DroSec_CAF1 92153 95 - 1
ACAACAACUGAACAACCCAACGAAGAAUGAACGAGUAAAACGUAGUGAACUUUGUUGCUAUCAAAGUUCAAACUGCAAUUCAUCUUCAUCAACAA
.....................(((((.((((...(.....)(((((((((((((.......))))))))..)))))..)))))))))........ ( -20.00)
>DroSim_CAF1 96256 95 - 1
ACAACAACUGAACAACCCAACGAAGAAUGAACGAGUAAAACGUGGUGAACUUUGUUGCUAUCAAAGUUUAAACUGCAAUUCAUCUUCAUCAACAA
.....................(((((.((((...(.....)(..((((((((((.......))))))))..))..)..)))))))))........ ( -17.20)
>DroEre_CAF1 90112 90 - 1
-----AACUGCAGAACCCAACGAAGAAUGAACGAGUAAAACGAAGUGAACUUUGUUGCUAUCAAAGUUCAAACUGCAAUUCAUCUUCAUCAACAA
-----...(((((....(......)..(((((..(((.(((((((....)))))))..)))....)))))..))))).................. ( -17.40)
>DroYak_CAF1 96031 95 - 1
ACAACAACUGAAGAACCCAGCGAAGAAUAAACGACUAAAACGAAGUGAACUUUGUUGCUAUCAAAGUUCAAACUGCAAUUCAUCUUCAUCAACAA
........((((((.....(((.........((.......))...(((((((((.......)))))))))...)))......))))))....... ( -15.80)
>consensus
ACAACAACUGAACAACCCAACGAAGAAUGAACGAGUAAAACGUAGUGAACUUUGUUGCUAUCAAAGUUCAAACUGCAAUUCAUCUUCAUCAACAA
.....................(((((.((((.(.......)(((((((((((((.......))))))))..)))))..)))))))))........ (-15.84 = -16.12 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:16 2006