Locus 429

Sequence ID 2L_DroMel_CAF1
Location 1,260,914 – 1,261,071
Length 157
Max. P 0.682625
window700 window701

overview

Window 0

Location 1,260,914 – 1,261,031
Length 117
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 82.02
Mean single sequence MFE -28.80
Consensus MFE -15.32
Energy contribution -17.12
Covariance contribution 1.80
Combinations/Pair 1.00
Mean z-score -2.06
Structure conservation index 0.53
SVM decision value 0.06
SVM RNA-class probability 0.565296
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1260914 117 - 22407834
CUUUUUGAAGCUUUUAGAGCAUAUAGCUGUAUAUUUGCUCUAUAGUUUCAUAAGCCAUGGAAGUGAUAGUAUUGUUUUCGUGGCUUUGGUAUGAUAACCAAUCCCACAACACGCUUU
.....(((((((..(((((((.(((......))).))))))).))))))).((((((((((((..((...))..))))))))))))((((......))))................. ( -37.50)
>DroSec_CAF1 20537 117 - 1
UUUUUUGACGCUUCUAGAGCAUAUAGCUGUAUAUUUGCGCUAUAGUUUCAUAAGCCAUGGAAGUGAUAGUAUUGUUUUCGUGGCUUUGGCAUGAUAACCAAUCCCACAACACGCUUU
...............(((((.((((((.(((....)))))))))(((((((((((((((((((..((...))..))))))))))))....)))).)))..............))))) ( -30.40)
>DroSim_CAF1 21050 117 - 1
CUUUUUGACGCUUCUAGAGCAUAUAGCUGUAUAUUUGCGCUAUAGUUUCAUAAGCCAUGGAAGUGAUAGUAUUGUUUUCGUGGCUUUGGCAUGAUAACCAAUCCCACAACACGCUUU
...............(((((.((((((.(((....)))))))))(((((((((((((((((((..((...))..))))))))))))....)))).)))..............))))) ( -30.40)
>DroEre_CAF1 33144 105 - 1
CCA-CUGAAUCCUCUCGAGCAUACAGCUCCACAUUGGACCUAUAGUUCCA----------UAGUGAUAGUAUUGUUUUGGUGGCUUUGGC-UGAUAACCAAUCCCACAACACGCUUU
..(-(((.........((((.....))))(((..((((.(....).))))----------..))).)))).........((((..((((.-......))))..)))).......... ( -23.30)
>DroYak_CAF1 21362 106 - 1
CCUUAUGAAUGUUUUAUAGCAUAUUGCUGU---------GUAUAGUUUAA--AGACAAGCAAGUGAUAGUAUUGUUUUCGUGGCUUUGGCAUGAUAACCAAUCCCACAACGCGCUUU
.(((.(((((....((((((.....)))))---------)....))))))--))..(((((((..((...))..)))..((((..((((........))))..)))).....)))). ( -22.40)
>consensus
CUUUUUGAAGCUUCUAGAGCAUAUAGCUGUAUAUUUGCGCUAUAGUUUCAUAAGCCAUGGAAGUGAUAGUAUUGUUUUCGUGGCUUUGGCAUGAUAACCAAUCCCACAACACGCUUU
................((((....(((((((.........)))))))...........(((((..((...))..)))))((((..((((........))))..)))).....)))). (-15.32 = -17.12 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 1,260,954 – 1,261,071
Length 117
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 74.49
Mean single sequence MFE -22.94
Consensus MFE -3.24
Energy contribution -4.00
Covariance contribution 0.76
Combinations/Pair 1.24
Mean z-score -1.56
Structure conservation index 0.14
SVM decision value 0.31
SVM RNA-class probability 0.682625
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1260954 117 - 22407834
AAUCCCAAUUCUAUUAUCCCCACUAGCAUAAGAACAUUUUCUUUUUGAAGCUUUUAGAGCAUAUAGCUGUAUAUUUGCUCUAUAGUUUCAUAAGCCAUGGAAGUGAUAGUAUUGUUU
.....((((.(((((((..(((...((..(((((....)))))..(((((((..(((((((.(((......))).))))))).)))))))...))..)))..))))))).))))... ( -32.70)
>DroSec_CAF1 20577 117 - 1
AAGCCCACUUUUAUUAUCCCCUCAAGCAUAAGAACAUUUAUUUUUUGACGCUUCUAGAGCAUAUAGCUGUAUAUUUGCGCUAUAGUUUCAUAAGCCAUGGAAGUGAUAGUAUUGUUU
.....(((((((((.......(((((.(((((....)))))..))))).((((.(..(((.((((((.(((....))))))))))))..).)))).)))))))))............ ( -22.40)
>DroSim_CAF1 21090 117 - 1
AAGCCCAAUUUUAUUAUCCCCCCAAGCAUAAGAACAUUUUCUUUUUGACGCUUCUAGAGCAUAUAGCUGUAUAUUUGCGCUAUAGUUUCAUAAGCCAUGGAAGUGAUAGUAUUGUUU
......(((..((((((((..(((.(((.(((((....)))))..)).)((((.(..(((.((((((.(((....))))))))))))..).))))..)))..).)))))))..))). ( -25.20)
>DroEre_CAF1 33183 106 - 1
AAGUUAAACUUCAUUCUCUCCCCAAGUUUAAGCAAUUGUUCCA-CUGAAUCCUCUCGAGCAUACAGCUCCACAUUGGACCUAUAGUUCCA----------UAGUGAUAGUAUUGUUU
...((((((((............))))))))(((((.....((-(((.........((((.....)))).....((((.(....).))))----------))))).....))))).. ( -18.50)
>DroYak_CAF1 21402 106 - 1
AAGCCAAAUUUUAUUCCCUCCUCGAGUUUAAGCAAAUAUUCCUUAUGAAUGUUUUAUAGCAUAUUGCUGU---------GUAUAGUUUAA--AGACAAGCAAGUGAUAGUAUUGUUU
....(((...((((..(...((.(..(((((((((((((((.....))))))))((((((.....)))))---------)....))))))--)..).))...)..))))..)))... ( -15.90)
>consensus
AAGCCCAAUUUUAUUAUCCCCCCAAGCAUAAGAACAUUUUCUUUUUGAAGCUUCUAGAGCAUAUAGCUGUAUAUUUGCGCUAUAGUUUCAUAAGCCAUGGAAGUGAUAGUAUUGUUU
......(((..(((((((...................((((.....)))).......(((.....)))....................................)))))))..))). ( -3.24 =  -4.00 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:04 2006