Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,268,480 – 12,268,604 |
Length | 124 |
Max. P | 0.626378 |
Location | 12,268,480 – 12,268,573 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 77.93 |
Mean single sequence MFE | -29.35 |
Consensus MFE | -18.77 |
Energy contribution | -19.25 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.17 |
Mean z-score | -1.28 |
Structure conservation index | 0.64 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.551131 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12268480 93 - 22407834 UGAAGGCCCACUUGGGACAGCUGGCUGAGAUGCCGUGCAAAGUUGUGGGUAGGUGUUUGGGGAAAAUCAUCUUCGACGGCGUCGACAUGGGUC ....((((((..((.(((.((((((......)))).))...(((((.((.((((((((.....))).))))))).))))))))..)))))))) ( -32.30) >DroSec_CAF1 91555 82 - 1 UGAAGGCCCACUUGGGACAGCUGGCUGAGAUGCCGUAGA-----------AGGUGUAUGGGGAAAAUCAUCUUCGACGGCGUCGACAUGGGUC ....((((((.......(((....))).((((((((.((-----------(((((.((.......))))))))).))))))))....)))))) ( -34.10) >DroSim_CAF1 95660 82 - 1 UGAAGGCCCACUUGGGACAGCUGGCUGAGAUGCCGUAGA-----------AGGUGUGUGGGGAAAAUCAUCUUCGACGGCGUCGACAUGGGUC ....((((((.......(((....))).((((((((.((-----------(((((............))))))).))))))))....)))))) ( -33.70) >DroEre_CAF1 89413 88 - 1 UGAAGGCCCACUUGGGACAGUCGGCUGAGAUGCCGAC-----UUGGGGAAAAGUGUGCGGGGAAAAUCAUCUUCGACGGCGUCGACAUGGGUC ....((((((..((.((((((((((......))))))-----).........((((.((((((......)))))))).)))))..)))))))) ( -31.30) >DroYak_CAF1 95369 87 - 1 UGAAGGCCCACUUGGGACAGCCGACUGAGAUGCCGAG-----UUAGGGA-AAGUGUGCGGGGAAAAUCAUCUUCGACGGCGUCGACAUGGGUC ....((((((..((.(((.(((((((....(.((...-----...)).)-.)))...((((((......)))))).)))))))..)))))))) ( -27.20) >DroPer_CAF1 148648 74 - 1 UGAAGGCACACUGGGGACAGCUAACAGAGAGAGAGAG-------------------AUAGGGCGACCCUUCUAUGGCGGCGUCGACAUGGGUC ....(((.((.((..(((.(((..((.........((-------------------(..((....))..))).))..))))))..)))).))) ( -17.50) >consensus UGAAGGCCCACUUGGGACAGCUGGCUGAGAUGCCGAG_____________AGGUGUGUGGGGAAAAUCAUCUUCGACGGCGUCGACAUGGGUC ....((((((..((.(((.((((((......))).......................((((((......))))))..))))))..)))))))) (-18.77 = -19.25 + 0.48)
Location | 12,268,512 – 12,268,604 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 79.95 |
Mean single sequence MFE | -17.10 |
Consensus MFE | -10.62 |
Energy contribution | -11.07 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.18 |
Mean z-score | -1.60 |
Structure conservation index | 0.62 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.626378 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12268512 92 + 22407834 CCCAAACACCUACCCACAACUUUGCACGGCAUCUCAGCCAGCUGUCCCAAGUGGGCCUUCAUUUUGAGGCUAAAAAACUUUUAUAAUAGAUU .........(((.((((......((..(((......))).))........))))(((((......)))))................)))... ( -16.44) >DroSec_CAF1 91587 81 + 1 CCCAUACACCU-----------UCUACGGCAUCUCAGCCAGCUGUCCCAAGUGGGCCUUCAUUUUGAGGCUAAAAAACUUUUAUAAUAGAUU ...........-----------((((.(((......))).........((((.((((((......)))))).....))))......)))).. ( -15.30) >DroSim_CAF1 95692 81 + 1 CCCACACACCU-----------UCUACGGCAUCUCAGCCAGCUGUCCCAAGUGGGCCUUCAUUUUGAGGCUAAAAAACUUUUAUAAUAGAUU ...........-----------((((.(((......))).........((((.((((((......)))))).....))))......)))).. ( -15.30) >DroEre_CAF1 89445 87 + 1 CCCGCACACUUUUCCCCAA-----GUCGGCAUCUCAGCCGACUGUCCCAAGUGGGCCUUCAUUUUGAGGCUAAAAAACUUUUAUAAUAGAUU ......(((((.......(-----((((((......))))))).....)))))((((((......))))))..................... ( -24.40) >DroYak_CAF1 95401 86 + 1 CCCGCACACUU-UCCCUAA-----CUCGGCAUCUCAGUCGGCUGUCCCAAGUGGGCCUUCAUUUUGAGGCUAAAAAACUUUUAUAAUAGAUU ......(((((-.......-----.(((((......))))).......)))))((((((......))))))..................... ( -15.66) >DroPer_CAF1 148680 73 + 1 CCUAU-------------------CUCUCUCUCUCUGUUAGCUGUCCCCAGUGUGCCUUCAUUUUGGGGGUAAAAAACUUUUAUAAUAGAUU .....-------------------.........(((((((((((....)))).(((((((.....)))))))...........))))))).. ( -15.50) >consensus CCCACACACCU_____________CACGGCAUCUCAGCCAGCUGUCCCAAGUGGGCCUUCAUUUUGAGGCUAAAAAACUUUUAUAAUAGAUU ...........................(((......)))..((((...((((.((((((......)))))).....)))).....))))... (-10.62 = -11.07 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:15 2006