Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,264,017 – 12,264,110 |
Length | 93 |
Max. P | 0.514476 |
Location | 12,264,017 – 12,264,110 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 82.47 |
Mean single sequence MFE | -27.10 |
Consensus MFE | -14.99 |
Energy contribution | -16.43 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.10 |
Mean z-score | -2.32 |
Structure conservation index | 0.55 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514476 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12264017 93 - 22407834 UUCCGCCAUUGUU--GGCCAUCGUGGUCUCUUAGGGACCAUUACCUCAACAUUGUGACAACAAAGGGGGGCCAAGAUUGGGUGGAGAAUAAAAAA (((((((..(.((--((((...(((((((.....)))))))..((((....((((....)))).)))))))))).)...)))))))......... ( -38.30) >DroSec_CAF1 87224 93 - 1 UUCUGCUUUUGCU--GGCCAUCUUGGUCUCUUAGGGACCAUUACCUCAACAUUGUGACAACAAAGUGGGGCCAAGAUUGGGAGGAGAAUAAAAAA ((((.(((((.((--((((....((((((.....))))))...((...((.((((....)))).)))))))).))...))))).))))....... ( -28.10) >DroSim_CAF1 91320 93 - 1 UUCCGCUUUUGCU--GGCCAUCUUGGUCUCUUAGGGACCAUUACCUCAACAUUGUGACAACAAAGUGGGGCCAAGAUUGGAAGGAGAAUAAAAAA ((((((....)).--..(((((((((((((..(((........)))..((.((((....)))).)))))))))))).)))..))))......... ( -28.80) >DroEre_CAF1 85301 91 - 1 --CCGCUUUUGCU--GGCCGCCUUGGUCUCUUAGGGACCAUUACCUCAACAUUGUGACAACAAAGUAGGGCCAAGAUUGGGAGGAGAAUAAAAAA --((.(((...((--((((....((((((.....))))))........((.((((....)))).))..)))).))...))).))........... ( -24.80) >DroYak_CAF1 90957 93 - 1 UUCCGCUUUUGCU--GGCCGCCUUGGUCUCUUAGGGACCAUUACCUCAACAUUGUGACAACAAAGUAGGGCCAAGAUUGGGAGGAGAAUAAAAAA ((((.(((...((--((((....((((((.....))))))........((.((((....)))).))..)))).))...))).))))......... ( -27.00) >DroAna_CAF1 80609 74 - 1 ----CCUUUUCCUUCCACCGUCUUGGUCUCAUUGGGACCAUUACCA-AAAACUGUGACAAAAAUGGGGGAC----------------AUAAAAAA ----........((((.((((..((((((.....))))))((((..-......)))).....)))))))).----------------........ ( -15.60) >consensus UUCCGCUUUUGCU__GGCCAUCUUGGUCUCUUAGGGACCAUUACCUCAACAUUGUGACAACAAAGUGGGGCCAAGAUUGGGAGGAGAAUAAAAAA ((((((....))...((((....((((((.....))))))...........((((....)))).....))))..........))))......... (-14.99 = -16.43 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:12 2006