Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,256,587 – 12,256,683 |
Length | 96 |
Max. P | 0.995915 |
Location | 12,256,587 – 12,256,683 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 86.75 |
Mean single sequence MFE | -21.54 |
Consensus MFE | -16.92 |
Energy contribution | -17.56 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.06 |
Mean z-score | -3.08 |
Structure conservation index | 0.79 |
SVM decision value | 2.63 |
SVM RNA-class probability | 0.995915 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12256587 96 - 22407834 CCCAUUUUUUUCUUUUUAAGCAAGUCAAGUGGGAAGCAAGUUUCCUAAUUACACCAACGUCGACGCAUCCUCGUCUUCACUUGACAUAUUUUCCCC .......................(((((((((((((....)))))................((((......))))..))))))))........... ( -20.60) >DroSec_CAF1 79780 92 - 1 CACAUUUUU----UUUUAAGCAAGUCAAGUGGGAAGCAAGUUUCCUAAUUACACCAACGUAGACGCAUCCUCGUCUUCACUUGACAUAUUUUCCCC .........----..........(((((((((((((....)))))...............(((((......))))).))))))))........... ( -21.00) >DroEre_CAF1 77475 89 - 1 CCCAUUU-------UUUAAGCAAGUCAAGUGGGAAGCAAGUCUCCUAAUUACACCAACGUCGACGCAUCCUCGUCUUCACUUGACAUAUUUUCCCC .......-------.........(((((((((((........)))................((((......))))..))))))))........... ( -18.10) >DroYak_CAF1 78950 92 - 1 CCCAUUUUU----UUUUGAGCAAGUCAAGUGGGAAGCAAGUUUCCUAAUUACACCAACGUCGACGCAUCCUCGUCUUCACUUGACAUAUUUUCCCC .........----..........(((((((((((((....)))))................((((......))))..))))))))........... ( -20.60) >DroAna_CAF1 72894 84 - 1 -------CA----UGUUAAGGAAGUCAAGUGGGAAGCAAGUUUCCUAAUUACGGCAACGU-AACGCGUCCUUAUCUUCUCUUGACAUAUUUUUCAC -------.(----(((((((((((..((((((((((....))))))).(((((....)))-))......)))..)))).))))))))......... ( -27.40) >consensus CCCAUUUUU____UUUUAAGCAAGUCAAGUGGGAAGCAAGUUUCCUAAUUACACCAACGUCGACGCAUCCUCGUCUUCACUUGACAUAUUUUCCCC .......................(((((((((((((....)))))................((((......))))..))))))))........... (-16.92 = -17.56 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:11 2006