| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,252,314 – 12,252,405 |
| Length | 91 |
| Max. P | 0.689892 |
| Location | 12,252,314 – 12,252,405 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.26 |
| Mean single sequence MFE | -28.22 |
| Consensus MFE | -19.91 |
| Energy contribution | -19.97 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.689892 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12252314 91 + 22407834 GCUACCACCGAGA---------------------AGGAGUU--UCCCGCUCUGACAUCGGCGCAUAAUUGAUGCCUCCGGGGAGCUGUGAUAAAAACAAAUCAGCGGCGCACAC------ ((..((.(((.((---------------------.(((((.--....)))))......((((((....)).))))))))))).((((((((........)))).))))))....------ ( -27.50) >DroPse_CAF1 116921 114 + 1 UCCACCACCGAAAGGGGAGUGAAAAAAUGGGGAAAAAAGUUGCCCCCGCUCUGACAUCAGCGCAUAAUUGAUGCCUCCGGGGAGCUGUGAUAAAAACAAAUCAGCGGCACACAC------ (((.((.((....))((((.(....(((((((...........))))((.(((....))).))...)))....))))))))))((((((((........)))).))))......------ ( -37.30) >DroSim_CAF1 79804 89 + 1 UCCACCACCGAAA---------------------AGGAGUU--UCCCGCUCUGACAUCGGCGCAUAAUUGAUGCCUCCGGGGAGCUGUGAUAAAAACAAAUCAGCGGCACAC-------- (((.((.((((..---------------------.(((((.--....)))))....)))).((((.....))))....)))))((((((((........)))).))))....-------- ( -26.20) >DroEre_CAF1 73373 97 + 1 UCCACCACCGAGA---------------------AGGAGUU--UCCCGCUCUGACAUCGGCGCAUAAUUGAUGCCUCCGGGGAGCUGUGAUAAAAACAAAUCAGCGGCACAAACACACAC (((.((.((((..---------------------.(((((.--....)))))....)))).((((.....))))....)))))((((((((........)))).))))............ ( -27.30) >DroYak_CAF1 74663 103 + 1 UCCACCACCGAGAAGG---------------AGAAGGAGUU--UCCCGCUCUGACAUCGGCGCAUAAUUGAUGCCUCCGGGGAGCUGUGAUAAAAACAAAUCAGCGGCACACCCAUACGC (((.((.((((...((---------------((..((....--.))..))))....)))).((((.....))))....)))))((((((((........)))).))))............ ( -29.40) >DroAna_CAF1 69185 91 + 1 UCCACCACCAAGG---------------------AAAAAGU--UCCUUUUCUGACAUCAGCGCAUAAUUGAUGCCUCCGGGGAGCUGUGAUAAAAACAAAUCAGCGGCACACAC------ (((.((...((((---------------------((....)--)))))..(((....))).((((.....))))....)))))((((((((........)))).))))......------ ( -21.60) >consensus UCCACCACCGAGA_____________________AGGAGUU__UCCCGCUCUGACAUCGGCGCAUAAUUGAUGCCUCCGGGGAGCUGUGAUAAAAACAAAUCAGCGGCACACAC______ ....((.(((.........................(((((.......)))))......((((((....)).))))..))))).((((((((........)))).))))............ (-19.91 = -19.97 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:10 2006