Locus 4283

Sequence ID 2L_DroMel_CAF1
Location 12,240,824 – 12,240,915
Length 91
Max. P 0.992919
window6753

overview

Window 3

Location 12,240,824 – 12,240,915
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 87.59
Mean single sequence MFE -11.78
Consensus MFE -10.81
Energy contribution -10.84
Covariance contribution 0.03
Combinations/Pair 1.07
Mean z-score -2.50
Structure conservation index 0.92
SVM decision value 2.36
SVM RNA-class probability 0.992919
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12240824 91 + 22407834
AUUUACUAAUCCAUUGCAAUUUGCCUCUCAACUUCUCCUUCAGGCAAAUUAUAGGCAAUAAUUUACAAUUUAAAAAAAAAAAGCUUAAAUA
............((((((((((((((...............)))))))))....)))))................................ ( -11.76)
>DroSec_CAF1 64229 84 + 1
AUUUACUAAUCCAUUGCAAUUUGCCUCUUAACUUCUCCUUCAGGCAAAUUAUAGGCAAUAAUUUACAAUUUUAAA----AAAGCUUAA---
............((((((((((((((...............)))))))))....)))))................----.........--- ( -11.76)
>DroSim_CAF1 65609 84 + 1
AUUUACUAAUCCAUUGCAAUUUGCCUCUCAACUUCUCCUUCAGGCAAAUUAUAGGCAAUAAUUUACAAUUUUAAA----AAAGCUUAA---
............((((((((((((((...............)))))))))....)))))................----.........--- ( -11.76)
>DroEre_CAF1 62092 87 + 1
AUUUACUAAUCCAUUGCAAUUUGCCUCUCAACUUCUCCUUCAGGCAAAUUAUAGGCAAUAUUUUACAAUUUUAAA----AAAACUGAAAUA
............((((((((((((((...............)))))))))....)))))........((((((..----.....)))))). ( -12.06)
>DroYak_CAF1 63240 87 + 1
ACUUACUAAUCCAUUGCAAUUUGCCUCUCAACUUCUCCUUCAGGCAAAUUAUAGGCAAUAUUUUACAAUUUUAAA----GAAACUUAAAUA
............((((((((((((((...............)))))))))....)))))................----............ ( -11.76)
>DroAna_CAF1 58847 86 + 1
ACUUACUAAUCCAUUGCAAUUUGCCUC-CAACUUCUCCUUCAGGAAAGUUAUUAGCAAUAGUUAUCAAUAGAAAU----GAAAAUUAGUUC
....((((((.((((.....((((...-.(((((.(((....))))))))....))))......((....)))))----)...)))))).. ( -11.60)
>consensus
AUUUACUAAUCCAUUGCAAUUUGCCUCUCAACUUCUCCUUCAGGCAAAUUAUAGGCAAUAAUUUACAAUUUUAAA____AAAACUUAAAUA
............((((((((((((((...............)))))))))....)))))................................ (-10.81 = -10.84 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:07 2006