Locus 4282

Sequence ID 2L_DroMel_CAF1
Location 12,240,311 – 12,240,409
Length 98
Max. P 0.757712
window6752

overview

Window 2

Location 12,240,311 – 12,240,409
Length 98
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 90.71
Mean single sequence MFE -21.06
Consensus MFE -18.39
Energy contribution -18.59
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.38
Structure conservation index 0.87
SVM decision value 0.49
SVM RNA-class probability 0.757712
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12240311 98 - 22407834
GGCAUCAUUGCACCCCGCCCACUUUCCACAUGGCCACCC--CCACAAACACAAACAUCUCGAGGGGCAAAAGUCGCUCUUCUGGCUUCUGUGGUCAAAAU
.(((....)))..............(((((.(((((...--...................(((((((.......))))))))))))..)))))....... ( -22.24)
>DroSec_CAF1 63716 99 - 1
GCCAUCAUUGCAG-CCGCCCACUUUCCACAUGGCCACCCCCCCACAAACACAAACAUCUCGAGGGGCAAAAGUCGCUCUUCUGGCUUCUGUGGUCAAAAU
(((((....(.((-(((((............)))..........................(((((((.......))))))).)))).).)))))...... ( -21.50)
>DroSim_CAF1 65092 97 - 1
GCCAUCAUUGCAC-CCGCCCACUUUCCACAUGGCCACCC--CCACAAACACAAACAUCUCGAGGGGCAAAAGUCGCUCUUCUGGCUUCUGUGGUCAAAAU
.........((..-..)).......(((((.(((((...--...................(((((((.......))))))))))))..)))))....... ( -19.64)
>DroEre_CAF1 61640 86 - 1
----------CA--CCACCCACUUUCCACAUGGCCACCC--CCACAGACACAAACAUCUCGAGGGGCAAAAGUCGCUCUUCUGGCUUCUGCGGUCAGAAU
----------..--................(((((...(--((.((((........))).).)))(((.((((((......)))))).)))))))).... ( -21.20)
>DroYak_CAF1 62756 95 - 1
-GCAUCAUCGCA--GCACCCACUUUCCACAUGGCCACCC--CCACAAACACAAACAUCUCGAGGGGCAAAAGUCGCUCUUCUGGCUUCUGUGGUCAAAAU
-((......)).--...........(((((.(((((...--...................(((((((.......))))))))))))..)))))....... ( -20.74)
>consensus
GCCAUCAUUGCA__CCGCCCACUUUCCACAUGGCCACCC__CCACAAACACAAACAUCUCGAGGGGCAAAAGUCGCUCUUCUGGCUUCUGUGGUCAAAAU
.........................(((((.(((((........................(((((((.......))))))))))))..)))))....... (-18.39 = -18.59 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:06 2006